PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G16200.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 333aa MW: 37962.6 Da PI: 6.5089

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G16200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.1	5.9e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeelv++yL+kkv+ kk++l +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ LPERR04G16200.1 7 VPPGFRFHPTDEELVDYYLRKKVALKKIDL-DVIKDVDLYKIEPWDLQEqcKIGNeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKP 99 69**************************.9***********952444442555******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle LPERR04G16200.1 100 IYV-KNCLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 136 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-60	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.315	7	156	IPR003441	NAC domain
Pfam	PF02365	2.8E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDAFTHVPPG FRFHPTDEEL VDYYLRKKVA LKKIDLDVIK DVDLYKIEPW DLQEQCKIGN 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKNCLVGMR KTLVFYRGRA 120 PNGQKSDWIM HEYRLETNEY ATPQEEGWVV CRVFKKRVTT VQRMAGDGGD SPFWFNEHVA 180 FMAPATSGHG LDSPYHVHRQ ISHPCKLEVE YHHHLLPQEP HFLHLPRLES PKLPAADIIG 240 ASADLQPPSG HTTVQQLQLQ IEPVFVTADA SASDWRDLDK LVASQFGGHG GSTPKETGYS 300 SQIQVFQVEG KQEDTLDYVS TSASCGGEDD LWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-50	2	157	10	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G16200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN634075	0.0	JN634075.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634595.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-118	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A0D9W7L8	0.0	A0A0D9W7L8_9ORYZ; Uncharacterized protein
STRING	LPERR04G16200.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-101	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]