PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G15300.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ARF | ||||||||
Protein Properties | Length: 674aa MW: 72135.3 Da PI: 6.3815 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.5e-24 | 133 | 234 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ +++ + + +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ ++ LPERR04G15300.2 133 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysTEPPVQ--FVYAKDVHGEEWRFRHIYRGTPRRHLLTTGWSAFVNQKKLLAGDSIVFM--RD 222 89*********************999****875444444..5999*********************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 + ++ +v+++r+ LPERR04G15300.2 223 EAGNVHVGIRRA 234 99999****997 PP | |||||||
2 | Auxin_resp | 116 | 3.2e-38 | 280 | 363 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+Y+Prast+eF+v+++ v +a++v++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+ LPERR04G15300.2 280 AARMAASGQPFEVLYYPRASTPEFCVRASAVTTAMSVHWCPGMRFKMAFETEDSSRISWfMGTVAGVHPADPIRWPQSPWRLLQ 363 688999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-36 | 128 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-30 | 131 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-20 | 132 | 233 | No hit | No description |
PROSITE profile | PS50863 | 12.59 | 133 | 235 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-21 | 133 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-21 | 133 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.2E-33 | 280 | 363 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 15.187 | 587 | 668 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MLTFTDLAAP TGDGGRCVGS QLWAACAGSM SSVPPVGAAV YYFPQGHAEQ ASAGVASDLL 60 SAARVPPLVP CRVVAVRFMA DAETDEVFAR IRLAPLRPGD AVVDVGEAAA AAAEAEARQE 120 EEGGGRATKP ASFAKTLTQS DANNGGGFSV PRFCAETIFP ELDYSTEPPV QFVYAKDVHG 180 EEWRFRHIYR GTPRRHLLTT GWSAFVNQKK LLAGDSIVFM RDEAGNVHVG IRRAKRGFGD 240 DGEGLSSLPG WGLMRPNASA CGGNGAAKGG KVPPENVLAA ARMAASGQPF EVLYYPRAST 300 PEFCVRASAV TTAMSVHWCP GMRFKMAFET EDSSRISWFM GTVAGVHPAD PIRWPQSPWR 360 LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRIPPYS EFPLDAHQLF 420 APAAPFLSNP MAAHGFPFLP FFPDSSSSSS SVQPAGIQGA RHAHFAPSFQ DLHTGGNLRP 480 NLLLYSGIHL PTADHAAAPP PARIISTDLT IGSPIAPPDD DGAKPQGFLL FGQAILTEEQ 540 IKNSGGTRKR SPNASEGSGS GITEGSPNNN HTPSPFNPPC SGHEVDLGQC KVYVQSEEVG 600 RSLDISELSS FEELYARLSE MFSIDGDGMS HTRVVYNSLS GKDKHAGDEP FCEFLKSARK 660 LTILIDAGSA TMGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-77 | 7 | 384 | 40 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G15300.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100795 | 1e-179 | AK100795.1 Oryza sativa Japonica Group cDNA clone:J023121F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691666.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: auxin response factor 10-like | ||||
Swissprot | Q01I35 | 0.0 | ARFJ_ORYSI; Auxin response factor 10 | ||||
Swissprot | Q7XKK6 | 0.0 | ARFJ_ORYSJ; Auxin response factor 10 | ||||
TrEMBL | A0A0D9W781 | 0.0 | A0A0D9W781_9ORYZ; Auxin response factor | ||||
STRING | LPERR04G15300.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |