PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G15170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 28969.3 Da PI: 7.1949 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.2 | 6.4e-10 | 10 | 37 | 1 | 28 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkl 28 lppGfrF P+deelv++yL kkv+++++ LPERR04G15170.1 10 LPPGFRFYPSDEELVCHYLYKKVTNEHV 37 79*********************99874 PP | |||||||
2 | NAM | 99.4 | 5.2e-31 | 41 | 116 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev s ++++vg++ktLvfy+grap+g k+ Wvmhe+rl LPERR04G15170.1 41 TASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPsTRAHVGMRKTLVFYQGRAPNGLKSGWVMHEFRL 116 4579************************************9967778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.979 | 1 | 135 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-50 | 8 | 135 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-27 | 11 | 116 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGLREIESTL PPGFRFYPSD EELVCHYLYK KVTNEHVAKL TASEWYFFSF RDRKYATGSR 60 TNRATKTGYW KATGKDREVR SPSTRAHVGM RKTLVFYQGR APNGLKSGWV MHEFRLDSPH 120 SPPKEDWVLC RVFQKSKGDG EQDNNGATSA ASPVTFAASS RAAVPDQAQA AYSDQTGSSM 180 GFAPRQNEIL DSSNHDHQLL NLAMFQCNSV LDQLPQEVNS SAMMGLGSIG IGDEYGFFYD 240 TGFEETASLG AAMRFPQGWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-39 | 1 | 135 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-39 | 1 | 135 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-39 | 1 | 135 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-39 | 1 | 135 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-39 | 1 | 135 | 7 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-39 | 1 | 135 | 7 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-39 | 1 | 135 | 7 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-39 | 1 | 135 | 7 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-39 | 1 | 135 | 7 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-39 | 1 | 135 | 7 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-39 | 1 | 135 | 7 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-39 | 1 | 135 | 7 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-39 | 1 | 135 | 4 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-39 | 1 | 135 | 4 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G15170.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK062955 | 0.0 | AK062955.1 Oryza sativa Japonica Group cDNA clone:001-109-C12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652516.1 | 1e-164 | PREDICTED: protein CUP-SHAPED COTYLEDON 1-like | ||||
Swissprot | Q84TE6 | 2e-50 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0D9W761 | 0.0 | A0A0D9W761_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G15170.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-68 | NAC domain containing protein 74 |