PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G14700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 30184.7 Da PI: 7.2054 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed llv+ v+q+G g+W+++++ g++R++k+c++rw +yl LPERR04G14700.1 24 KGPWTSQEDTLLVEHVRQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 71 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 77 | 121 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ LPERR04G14700.1 77 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 121 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.222 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-29 | 22 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-15 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-17 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-23 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.84E-12 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 25.396 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-15 | 77 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 79 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.36E-11 | 81 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MATAEVQSAP GWGRQQQDGG GWRKGPWTSQ EDTLLVEHVR QHGEGRWNSV SKLTGLKRSG 60 KSCRLRWVNY LRPDLKRGKI TPQEESIIVQ LHALWGNRWS TIARSLPGRT DNEIKNYWRT 120 HFKKGKPSKN IERARARFLK QRREMQQQSQ QQHHQPPPQT KVDDVAVVEA GISCTDDDVV 180 AAPPPSSSLP GNNEADQQLI IQDAMDDLMM CPTMSYQLLL HGAVGQLSNG GGSCCASTSE 240 EYGSSEEDGA TWGSLWNLDG VVDHDGACSL W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 24 | 124 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G14700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109620 | 0.0 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634463.1 | 1e-141 | transcription factor WER | ||||
TrEMBL | A0A0D9W6Y9 | 0.0 | A0A0D9W6Y9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G14700.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 3e-63 | myb domain protein 79 |