PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G14040.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CO-like
Protein Properties Length: 332aa    MW: 34807.5 Da    PI: 5.2542
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G14040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.52.8e-082057438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                     r+C+ ++ + ++l+C+ +  +lC+ C    H g    H 
  LPERR04G14040.1 20 RVCDACGGEAARLYCRADAAFLCAGCDARAH-GagsrHA 57
                     79**************************999.4466675 PP
2zf-B_box23.21.4e-0759101339
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                       + C+ +e+ +++  C+ +   lC+ C   +H+       H++
  LPERR04G14040.1  59 VWLCEVCEHAPASVTCKADAAALCAACDADIHSAnplarrHER 101
                      679*****************************65777777775 PP
3CCT70.15.7e-24244287144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  LPERR04G14040.1 244 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 287
                      9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8081761IPR000315B-box-type zinc finger
SMARTSM003364.7E-91761IPR000315B-box-type zinc finger
PfamPF006431.4E-62057IPR000315B-box-type zinc finger
CDDcd000214.93E-92061No hitNo description
PROSITE profilePS5011910.29657104IPR000315B-box-type zinc finger
PfamPF006437.2E-659103IPR000315B-box-type zinc finger
SMARTSM003361.6E-962104IPR000315B-box-type zinc finger
PfamPF062039.4E-18244286IPR010402CCT domain
PROSITE profilePS5101716.876244286IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEGDDKSAVV GGAYWGLAAR VCDACGGEAA RLYCRADAAF LCAGCDARAH GAGSRHARVW  60
LCEVCEHAPA SVTCKADAAA LCAACDADIH SANPLARRHE RFPVAPFFGA LADAPKPFAS  120
SGPTGAGADG GGAANDDGGD DGSNDAEAAS WLLPEPDHQG HQKAGDVFYA DSDSYLDLDF  180
ARSMDDIKSI GVQNCPPELD ISATKLFYSD HSINHSVSSS EAAVVPDAAV GGAPMPVVSR  240
GREREARLMR YREKRKSRRF EKTIRYASRK AYAETRPRIK GRFAKRTPRG GGADADGEDE  300
EMYSSAAAAV AALMAPPGSD ADYGVDGVVP TF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G14040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825843.11e-167zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK535e-73COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0D9W6Q80.0A0A0D9W6Q8_9ORYZ; Uncharacterized protein
STRINGLPERR04G14040.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.29e-25CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]