PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G13900.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Nin-like

Protein Properties

Length: 927aa MW: 101242 Da PI: 6.129

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G13900.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	26.3	1.4e-08	554	583	1	30
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclT 30 aek+isl++l+kyFs+++kdAAk+Lgv + LPERR04G13900.1 554 AEKNISLDVLRKYFSGSLKDAAKSLGVNRS 583 589************************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	2.6E-6	557	589	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.57E-24	798	886	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-22	799	881	No hit	No description
SMART	SM00666	1.1E-20	802	884	IPR000270	PB1 domain
PROSITE profile	PS51745	24.364	802	886	IPR000270	PB1 domain
Pfam	PF00564	1.1E-16	803	881	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MDMPTPSNRA GCNGNISSCE EHSDDPYGTA AMNFDSYPEI CSPSVADQLF SLLNDPAAHR 60 MFAMWSSSMG SSPRAAGMSE DIQLETYSGL GEAVEEPSQI MSVNPTEAER TSKSSSELGS 120 DNGAHQGSSI VPRSLVSNSL ADRMLMALSL FRESLGNDAL AQVWMPIEQE GHVLLSTCEQ 180 PFLLDQVLAG YREASRHFVF SAKEEPGLHP GLPGRVFISG VPEWTSSVRY YNRPEYLRME 240 HALHHDIRGS LAMPIYDPSK DSCCAVLELV TKKEKPDFSA EMDSAVNLKA KKDSSNQKFY 300 TDNQKLAFTE ILDVLRAICH AHMLPLALTW VPTSNGSDGG YIVGKDSAKN SQSGKAILQI 360 HESACYVNDT NMQCFFQACA KRHLEKGQGI AGRALKSNLP FFSPNVKEYS IEDYPLAHHA 420 RKFGLHAAVA IRLRSTYTGN DDYILEFFLP VNCRGSGEQQ MLLNKLSSTM QRICKSLRTV 480 YEGEVDKVSA CTAAMFSKTN ESCLPTGRTE SSSHDDQPIT EASLVNEPEV MEPELAEQVQ 540 SSSTRHADKK RSTAEKNISL DVLRKYFSGS LKDAAKSLGV NRSLKKIQTV INSVHGVDRS 600 LQYDPATGSL VPVVSLPEKL TFPCDALPTP SVEKAMEEKS GPKSEQGYSS ADGSLKQSCQ 660 LHISDVKKSK GDEFHVQTSN YIGSGDSASY GANVMTKSNS EGAQGPLCPA GAFSALHIKG 720 TDCTNLSASL RPSSDTTRYQ IVGRNSPSTQ QADIDMLGGH EKGDHIYPST SGMTDSSSGS 780 ASSQPTFKQN IRRDLKDKTS PALTVKATYN GDTVRFKFLP SMGWYHLLEE IAKRFKLSTG 840 AFQIKYKDDE DEWVILANDS DLQECVDVLD SIGSHNVKLQ ISLVSSAAQE AALVCSWKRI 900 ARDRGYTVEQ PVIFLDVTKA TTCGRLG

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MDMPTPSNRA GCNGNISSCE EHSDDPYGTA AMNFDSYPEI CSPSVADQLF SLLNDPAAHR  60
MFAMWSSSMG SSPRAAGMSE DIQLETYSGL GEAVEEPSQI MSVNPTEAER TSKSSSELGS  120
DNGAHQGSSI VPRSLVSNSL ADRMLMALSL FRESLGNDAL AQVWMPIEQE GHVLLSTCEQ  180
PFLLDQVLAG YREASRHFVF SAKEEPGLHP GLPGRVFISG VPEWTSSVRY YNRPEYLRME  240
HALHHDIRGS LAMPIYDPSK DSCCAVLELV TKKEKPDFSA EMDSAVNLKA KKDSSNQKFY  300
TDNQKLAFTE ILDVLRAICH AHMLPLALTW VPTSNGSDGG YIVGKDSAKN SQSGKAILQI  360
HESACYVNDT NMQCFFQACA KRHLEKGQGI AGRALKSNLP FFSPNVKEYS IEDYPLAHHA  420
RKFGLHAAVA IRLRSTYTGN DDYILEFFLP VNCRGSGEQQ MLLNKLSSTM QRICKSLRTV  480
YEGEVDKVSA CTAAMFSKTN ESCLPTGRTE SSSHDDQPIT EASLVNEPEV MEPELAEQVQ  540
SSSTRHADKK RSTAEKNISL DVLRKYFSGS LKDAAKSLGV NRSLKKIQTV INSVHGVDRS  600
LQYDPATGSL VPVVSLPEKL TFPCDALPTP SVEKAMEEKS GPKSEQGYSS ADGSLKQSCQ  660
LHISDVKKSK GDEFHVQTSN YIGSGDSASY GANVMTKSNS EGAQGPLCPA GAFSALHIKG  720
TDCTNLSASL RPSSDTTRYQ IVGRNSPSTQ QADIDMLGGH EKGDHIYPST SGMTDSSSGS  780
ASSQPTFKQN IRRDLKDKTS PALTVKATYN GDTVRFKFLP SMGWYHLLEE IAKRFKLSTG  840
AFQIKYKDDE DEWVILANDS DLQECVDVLD SIGSHNVKLQ ISLVSSAAQE AALVCSWKRI  900
ARDRGYTVEQ PVIFLDVTKA TTCGRLG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G13900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060753	0.0	AK060753.1 Oryza sativa Japonica Group cDNA clone:001-032-G10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636521.1	0.0	protein NLP2
Refseq	XP_015636522.1	0.0	protein NLP2
Refseq	XP_015636523.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A0D9W6P0	0.0	A0A0D9W6P0_9ORYZ; Uncharacterized protein
STRING	LPERR04G13900.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-152	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]