PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G13880.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bZIP | ||||||||
Protein Properties | Length: 169aa MW: 18183.3 Da PI: 4.448 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.7 | 9e-12 | 120 | 167 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l++l LPERR04G13880.2 120 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSML 167 9*****************************************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.5E-6 | 116 | 168 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.381 | 118 | 169 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.8E-10 | 120 | 167 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.7E-11 | 120 | 168 | No hit | No description |
SuperFamily | SSF57959 | 3.15E-11 | 120 | 168 | No hit | No description |
CDD | cd14703 | 1.76E-22 | 121 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MDPAASTSAA ESSRDVVAAM PDSPPRRAAR HRRAQSEILL GAALPDDIGF DADLGVVGEV 60 GGGGDDYEEE EDEDYDEEGA GGSRMFEMFL EAGGKLEMGA DAKKAISDAK LAELALVDPK 120 RAKRILANRQ SAARSKERKM RYIAELERKV QTLQTEATTL SAQLSMLQP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G13880.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606627 | 6e-83 | AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence. | |||
GenBank | AP014960 | 6e-83 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CR855196 | 6e-83 | CR855196.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353704.1 | 6e-65 | uncharacterized protein LOC100382174 | ||||
Swissprot | Q04088 | 1e-40 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | A0A0D9W6N7 | 1e-115 | A0A0D9W6N7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9W6N8 | 1e-115 | A0A0D9W6N8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G13880.1 | 1e-115 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 3e-35 | bZIP family protein |
Publications ? help Back to Top | |||
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