PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G13310.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Trihelix

Protein Properties

Length: 446aa MW: 48743.8 Da PI: 8.3295

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G13310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.6	1.1e-25	99	167	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+l Li++rrem+ +++++k++k+lWe++s +mre+g+ rsp++C++kw+nl k++kk + ++++ LPERR04G13310.1 99 WLHDETLSLIALRREMDAHFNTSKSNKHLWEAISGRMREQGYDRSPTMCTDKWRNLLKEFKKARSHARG 167 ***************************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.142	91	155	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.6E-4	92	159	IPR009057	Homeodomain-like
SMART	SM00717	0.002	95	157	IPR001005	SANT/Myb domain
CDD	cd12203	4.52E-29	97	162	No hit	No description
Pfam	PF13837	1.2E-17	98	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MTFTPLLVPY TKNVRRVGHQ SPLLPSHHRL HRPHGAPPPL PSPRPRLRGP AMLLSGPSPQ 60 QPTPPLLLPE SSGEDGVHDH DSSSRAAAAA GPKKRAETWL HDETLSLIAL RREMDAHFNT 120 SKSNKHLWEA ISGRMREQGY DRSPTMCTDK WRNLLKEFKK ARSHARGGGA VGVGAIGGVN 180 CPYKMECYKE IDDLLKRRVK PGGGGGGGGG AAVGGGHGGG GGGGGAVKSP TVSSKIDSYL 240 QFAADKGFED ANIPFGPVEA SGRSLLSVED RLEPDGHPLA LTADAVATNG VNPWNWRDTS 300 TNGENNHVTF GGRVILVKWG NYTKRIGIDG TADAIKEAIK SAFGLRTRRA FWLEDEDEVV 360 RSLDRDMPVG TYTLHLDNGM TIKLCMFEND EVRTEDKTFY TEEDFRDFLS RRGWTLLREY 420 SGYRIADTLD DLRPGVIYEG MRSLGD

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MTFTPLLVPY TKNVRRVGHQ SPLLPSHHRL HRPHGAPPPL PSPRPRLRGP AMLLSGPSPQ  60
QPTPPLLLPE SSGEDGVHDH DSSSRAAAAA GPKKRAETWL HDETLSLIAL RREMDAHFNT  120
SKSNKHLWEA ISGRMREQGY DRSPTMCTDK WRNLLKEFKK ARSHARGGGA VGVGAIGGVN  180
CPYKMECYKE IDDLLKRRVK PGGGGGGGGG AAVGGGHGGG GGGGGAVKSP TVSSKIDSYL  240
QFAADKGFED ANIPFGPVEA SGRSLLSVED RLEPDGHPLA LTADAVATNG VNPWNWRDTS  300
TNGENNHVTF GGRVILVKWG NYTKRIGIDG TADAIKEAIK SAFGLRTRRA FWLEDEDEVV  360
RSLDRDMPVG TYTLHLDNGM TIKLCMFEND EVRTEDKTFY TEEDFRDFLS RRGWTLLREY  420
SGYRIADTLD DLRPGVIYEG MRSLGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-36	93	190	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G13310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ535489	0.0	AJ535489.3 Oryza sativa Indica Group mRNA for RML1 protein.
GenBank	AK103296	0.0	AK103296.1 Oryza sativa Japonica Group cDNA clone:J033125B02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635625.2	0.0	trihelix transcription factor GT-4
Swissprot	Q9FX53	1e-137	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0D9W6F0	0.0	A0A0D9W6F0_9ORYZ; Uncharacterized protein
STRING	LPERR04G13310.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-135	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]