PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G12800.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 1002aa    MW: 109801 Da    PI: 6.2587
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G12800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.93.1e-301072501128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 
                      lp+G++F+Ptd e++ e+L++k++  +      ++ +   ikev +i++++P++Lp  +k + ++ yfF++ +++y  gkrk+r+         
  LPERR04G12800.1 107 LPAGVKFDPTDPEIL-EHLERKINMGNpgppslIDHFIPtIKEVeGICYTHPENLP-GIKMDGSSSYFFHRISNAYGCGKRKRRKircnnhtad 198
                      799***********9.99****998888998875544445999989**********.667788999******************8677777655 PP

              NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                       ++ +W++tg++ke+++++g ++glkk+Lv+ykg r+ k e+++Wv+h+y+l
  LPERR04G12800.1 199 DENIRWHKTGRSKEIHENNGVKKGLKKILVLYKGsRQDKIEQANWVIHQYSL 250
                      44788***************************997888999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-3293268IPR003441NAC domain
PROSITE profilePS5100529.589107268IPR003441NAC domain
PfamPF023651.3E-12108250IPR003441NAC domain
PROSITE profilePS513758.396587617IPR002885Pentatricopeptide repeat
PfamPF015350.004590615IPR002885Pentatricopeptide repeat
PfamPF130411.6E-16617667IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.134618652IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.7E-9620654IPR002885Pentatricopeptide repeat
SuperFamilySSF819013.66E-9632850No hitNo description
PROSITE profilePS5137512.244654688IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-8656686IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.4E-11668927IPR011990Tetratricopeptide-like helical domain
PfamPF130411.8E-10689736IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.643690724IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.6E-7692725IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.786725759IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.9E-5728761IPR002885Pentatricopeptide repeat
PfamPF130412.6E-16759808IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.009760794IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.2E-10762793IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.575795829IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.7E-7797830IPR002885Pentatricopeptide repeat
PfamPF128541.0E-7825858IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.893830864IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.1E-7832865IPR002885Pentatricopeptide repeat
PfamPF130411.2E-17864911IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.272865899IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.5E-11867900IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.504900934IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-9902935IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.461935969IPR002885Pentatricopeptide repeat
PfamPF130411.6E-13935981IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-10938970IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    Send to blast
MARGFCGLMR FEGNLPLEGT KLLRDVVTGF LLVMVSLAAS TEGFSFQIAP FRTWIIFGGE  60
VIATKIRNAT QLLSCKLGEL VPEAWGECPN CKVPIDNSNV NLQWPELPAG VKFDPTDPEI  120
LEHLERKINM GNPGPPSLID HFIPTIKEVE GICYTHPENL PGIKMDGSSS YFFHRISNAY  180
GCGKRKRRKI RCNNHTADDE NIRWHKTGRS KEIHENNGVK KGLKKILVLY KGSRQDKIEQ  240
ANWVIHQYSL GLEDEKDGEL VVSKVFYQLS SKQTCTPEMD SVTEEASDAL TIKSDPITTI  300
TNPPQPRRPM NSPCDTEQNG TISHDQEEGE CGTSILRPKV EPENLPGCSG TASTDEDSLK  360
LEALLQWCSD LPGDPVAPLE EPLPFPGMDA FSAMSPDLGF SLALISDLQN FVYVGLRIST  420
RVAVLQSISV SLHVDPAFCL SSRLGKDDPN SKPSPNSVVE TSRKPFPSMA PPTSTAAAVA  480
AAARAAPTSA AALSLFKSAL SADAVLSPLA VLPHLTGGDA PSSLPSLLLA ATAAARPHAT  540
SLRLYARIKS LSLPISAASL HPLLSALPSA PAFALFADMF RLRLPLCTTT FNIMLRHLCF  600
SGKPSRALQL LRQMPRPNAV TYNTVIAGFC SRGRVQAAMD IMREMRERGG IAPNQYTYGT  660
VISGWCKVGR VDEAAKVFDE MLTKGEVKPE AVMYNALIGG YCDQGKLDTA FLYCHKMLER  720
GVAMTVATYN LLVHALFMDG RGTEAYELVE EMGGKGLAPD VFTYNILING HCREGNVKKA  780
LEVFETMSRK GVRATGVTYT SLIYALSKKG QVQETDKLFD EAVKRGIRPD LVLYNALINS  840
HSSSGDIDRA FEIMGEMEKK RIAPDDVTYN TLMRGLCLLG RVDEARKLID DMTKRGIKPD  900
LVTYNTLIRG YSMKGDVKDA LRIRNEMMDK GFNPTLLTYN ALIQGLCKNG QGDDAENMVK  960
EMVENGITPD DSTYISLIEV LTTEDERAIE DEQLAPEDAT KA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A1e-1155609812444pentatricopeptide repeat protein dPPR-U10
5i9h_A1e-1155609812444pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G12800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551560.0CR855156.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0116M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634992.20.0pentatricopeptide repeat-containing protein At2g15630, mitochondrial
TrEMBLA0A0D9W6880.0A0A0D9W688_9ORYZ; Uncharacterized protein
STRINGLPERR04G12800.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.29e-62pentatricopeptide (PPR) repeat-containing protein