PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G12670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 214aa MW: 24020.4 Da PI: 4.5874 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 39.1 | 2.3e-12 | 7 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lp G+rF+Ptd +++ +yL + + + + ++ +v++ vd++ + P +p + + + yfF + t++r + + g W g LPERR04G12670.1 7 LPSGYRFNPTDRQIIGCYLIPMALHGEdslTQKGDVVEGVDVFATRPDAIPFdprhVLGRSVVRAYFFGDHP----TDSRGREVPGGGAWLPCG 96 699******************988888565444568**************954543333344478***9874....5668888999****9876 PP NAM 88 k..dkevlsk..kgelvglkktLvfy..kgrapkge..ktdWvmheyrl 128 ++ +s ++e+v + f ++++ g+ +W m+e+rl LPERR04G12670.1 97 GggGEKAYSGgdGDETVAYRLKYEFRtaEEEETGGRrrGPRWRMKEFRL 145 53345555554555566666666666432333333321468******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-16 | 3 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.714 | 7 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-9 | 8 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAHRANLPSG YRFNPTDRQI IGCYLIPMAL HGEDSLTQKG DVVEGVDVFA TRPDAIPFDP 60 RHVLGRSVVR AYFFGDHPTD SRGREVPGGG AWLPCGGGGG EKAYSGGDGD ETVAYRLKYE 120 FRTAEEEETG GRRRGPRWRM KEFRLNKGAA AFRRAHARPN PKANLDCVVR VVYTKVDEDE 180 LEEEDDDYEP MDYEFEFEDF DDDQIVAEAA AEAH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G12670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634860.1 | 3e-83 | NAC domain-containing protein 67-like | ||||
TrEMBL | A0A0D9W675 | 1e-155 | A0A0D9W675_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G12670.1 | 1e-156 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12891 | 22 | 31 |