PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G11770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26613.4 Da PI: 9.4944 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.4 | 1.9e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA+EL +LCdaev +iifsstg+lyey+s LPERR04G11770.1 10 RIDNSTSRQVTFSKRRNGIFKKAKELGILCDAEVGLIIFSSTGRLYEYAS 59 8***********************************************86 PP | |||||||
2 | K-box | 60.2 | 8.2e-21 | 90 | 165 | 22 | 98 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +kL+ + +L r+ l+G dL+ L +keLq Le+qL+ s+ iR+kK++l++++i+el +k +++en++L +k+ LPERR04G11770.1 90 SKLETTTAQLARK-SPLMGLDLSGLGVKELQTLENQLKMSIHCIRTKKDQLMIDEIHELNRKGSLIHQENMELYRKV 165 7999999999998.9***********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.721 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.48E-45 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 3.92E-32 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.719 | 75 | 171 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.7E-18 | 102 | 165 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELGILCD AEVGLIIFSS TGRLYEYAST 60 SMKSVIDRYG RAKEEQQLVA NPNSELKGGS KLETTTAQLA RKSPLMGLDL SGLGVKELQT 120 LENQLKMSIH CIRTKKDQLM IDEIHELNRK GSLIHQENME LYRKVNLIRQ ENAELYKKFY 180 ETGAETEVNR DSTTPYNFAV VEDANAPVRL ELNPPHQQND TEQTAPPKLG LQLHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_B | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_C | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_D | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G11770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243669 | 1e-162 | AK243669.1 Oryza sativa Japonica Group cDNA, clone: J100089N11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652364.1 | 1e-145 | PREDICTED: MADS-box transcription factor 27-like | ||||
Swissprot | Q6EP49 | 1e-122 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0D9W5U1 | 1e-174 | A0A0D9W5U1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G11770.2 | 1e-174 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 3e-76 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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