PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G11740.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 358aa    MW: 38400.2 Da    PI: 7.3729
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G11740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.57.5e-55141391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL+kk+++ ++ +  +++e+d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdk++++
  LPERR04G11740.1  14 LPPGFRFHPTDEELITHYLAKKIADARFAA-LAVAEADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGKDKDIFR 106
                      79*************************999.67***************8778899*************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++lvg+kktLvfy+grapkgek+ Wvmheyrl
  LPERR04G11740.1 107 -GKALVGMKKTLVFYTGRAPKGEKSGWVMHEYRL 139
                      .99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-649165IPR003441NAC domain
PROSITE profilePS5100559.04514165IPR003441NAC domain
PfamPF023659.3E-3015139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MERADHQGQA AMDLPPGFRF HPTDEELITH YLAKKIADAR FAALAVAEAD LNKCEPWDLP  60
SLARMGEKEW YFFCLKDRKY PTGLRTNRAT ESGYWKATGK DKDIFRGKAL VGMKKTLVFY  120
TGRAPKGEKS GWVMHEYRLH AKLHPAPKPM SASKNEWVLC RVFKKSLLEV GGSAGAKKAA  180
AAAASTSSVA DEIAMSSVLP PLMDMSGGGG VDAATTAHVT CFSNNALEGQ FFNPTAVVHG  240
HGGGGGGEDH HHHHQHGHLM AAASSPFMAS SFAQYGQLHH GVSLVQLLES CNGYGGLVDM  300
TAAAAAVGGQ HQHQLAACGG ERERLSASQD TGLTSDVNPE ISSSSGQRFD HEAALWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-561216515165NO APICAL MERISTEM PROTEIN
1ut4_B2e-561216515165NO APICAL MERISTEM PROTEIN
1ut7_A2e-561216515165NO APICAL MERISTEM PROTEIN
1ut7_B2e-561216515165NO APICAL MERISTEM PROTEIN
3swm_A3e-561216518168NAC domain-containing protein 19
3swm_B3e-561216518168NAC domain-containing protein 19
3swm_C3e-561216518168NAC domain-containing protein 19
3swm_D3e-561216518168NAC domain-containing protein 19
3swp_A3e-561216518168NAC domain-containing protein 19
3swp_B3e-561216518168NAC domain-containing protein 19
3swp_C3e-561216518168NAC domain-containing protein 19
3swp_D3e-561216518168NAC domain-containing protein 19
4dul_A2e-561216515165NAC domain-containing protein 19
4dul_B2e-561216515165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G11740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281811e-180AB028181.1 Oryza sativa mRNA for OsNAC2 protein, complete cds.
GenBankAK0617451e-180AK061745.1 Oryza sativa Japonica Group cDNA clone:001-038-F10, full insert sequence.
GenBankAK0710201e-180AK071020.1 Oryza sativa Japonica Group cDNA clone:J023080H09, full insert sequence.
GenBankAK1046261e-180AK104626.1 Oryza sativa Japonica Group cDNA clone:006-310-B03, full insert sequence.
GenBankCT8286361e-180CT828636.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012A02, full insert sequence.
GenBankCT8301071e-180CT830107.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence.
GenBankDQ5206411e-180DQ520641.1 Oryza sativa (japonica cultivar-group) NAC domain protein (TIL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633922.10.0NAC domain-containing protein 92
RefseqXP_015633924.10.0NAC domain-containing protein 92
TrEMBLA0A0D9W5T80.0A0A0D9W5T8_9ORYZ; Uncharacterized protein
STRINGLPERR04G11740.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.28e-88NAC domain containing protein 80