PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G10720.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 455aa MW: 49341.1 Da PI: 8.9236 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.6 | 3.9e-09 | 10 | 36 | 1 | 27 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk 27 +ppGfrFhPtdeel+ +yLkkk+ +k LPERR04G10720.4 10 VPPGFRFHPTDEELLLYYLKKKIGFEK 36 69********************97665 PP | |||||||
2 | NAM | 100.5 | 2.4e-31 | 42 | 115 | 55 | 129 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle LPERR04G10720.4 42 QNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 115 67*************************************9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.817 | 1 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-49 | 5 | 137 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-27 | 11 | 114 | IPR003441 | NAC domain |
Pfam | PF08583 | 1.7E-14 | 374 | 443 | IPR013892 | Cytochrome c oxidase biogenesis protein Cmc1-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0010181 | Molecular Function | FMN binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFEKIGSA PQNEWYFFSH KDRKYPTGSR 60 TNRATTAGFW KATGRDKCIR TSYRKIGMRK TLVFYRGRAP HGQKTDWIMH EYRLEDADDA 120 QGGTSEDGWV VCRVFKKKCF FKIGGGGGGG GEGSSGSQGG GGDIFGGHGH HLAVSPPLDH 180 DHHQARAAMA AASHYMHHPH QYHSSFYYSQ MQPSPPPPPP PPHSAYSHHV QVQDLLTNHR 240 PSASAADAAG GGYDFSGGLQ PVAAAGLDVG SSDGLGEGVG RDHATGGDAG GAEQQWQGMD 300 GFSNGGGGAA AVQQQLASAM SSGGQRGGEM DLWGYGSRLL RFRSLPAPSA TAKSSPPSAA 360 SSTGVVHINI SSEMHPPLTL HRHPMCAEII EAFQKCHVDH PVKKFFGECT DLKIKLDKCF 420 RQEKALKRKA NFEESKKFKE QLQAYKREMA ENDKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-41 | 10 | 138 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-41 | 10 | 138 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-41 | 10 | 138 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-41 | 10 | 138 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-41 | 10 | 138 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-41 | 10 | 138 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-41 | 10 | 138 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-41 | 10 | 138 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-41 | 10 | 138 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-41 | 10 | 138 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-41 | 10 | 138 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-41 | 10 | 138 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-41 | 10 | 138 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-41 | 10 | 138 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G10720.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971542 | 1e-117 | EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824150.1 | 1e-163 | protein BEARSKIN1-like | ||||
Swissprot | Q9SV87 | 3e-82 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A0D9W5F8 | 0.0 | A0A0D9W5F8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G10720.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 3e-65 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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