PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G10720.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 455aa    MW: 49341.1 Da    PI: 8.9236
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G10720.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.63.9e-091036127
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkk 27
                     +ppGfrFhPtdeel+ +yLkkk+  +k
  LPERR04G10720.4 10 VPPGFRFHPTDEELLLYYLKKKIGFEK 36
                     69********************97665 PP

2NAM100.52.4e-314211555129
              NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  LPERR04G10720.4  42 QNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 115
                      67*************************************9.8999****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.8171137IPR003441NAC domain
SuperFamilySSF1019411.44E-495137IPR003441NAC domain
PfamPF023652.9E-2711114IPR003441NAC domain
PfamPF085831.7E-14374443IPR013892Cytochrome c oxidase biogenesis protein Cmc1-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFEKIGSA PQNEWYFFSH KDRKYPTGSR  60
TNRATTAGFW KATGRDKCIR TSYRKIGMRK TLVFYRGRAP HGQKTDWIMH EYRLEDADDA  120
QGGTSEDGWV VCRVFKKKCF FKIGGGGGGG GEGSSGSQGG GGDIFGGHGH HLAVSPPLDH  180
DHHQARAAMA AASHYMHHPH QYHSSFYYSQ MQPSPPPPPP PPHSAYSHHV QVQDLLTNHR  240
PSASAADAAG GGYDFSGGLQ PVAAAGLDVG SSDGLGEGVG RDHATGGDAG GAEQQWQGMD  300
GFSNGGGGAA AVQQQLASAM SSGGQRGGEM DLWGYGSRLL RFRSLPAPSA TAKSSPPSAA  360
SSTGVVHINI SSEMHPPLTL HRHPMCAEII EAFQKCHVDH PVKKFFGECT DLKIKLDKCF  420
RQEKALKRKA NFEESKKFKE QLQAYKREMA ENDKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-411013817166NO APICAL MERISTEM PROTEIN
1ut4_B2e-411013817166NO APICAL MERISTEM PROTEIN
1ut7_A2e-411013817166NO APICAL MERISTEM PROTEIN
1ut7_B2e-411013817166NO APICAL MERISTEM PROTEIN
3swm_A2e-411013820169NAC domain-containing protein 19
3swm_B2e-411013820169NAC domain-containing protein 19
3swm_C2e-411013820169NAC domain-containing protein 19
3swm_D2e-411013820169NAC domain-containing protein 19
3swp_A2e-411013820169NAC domain-containing protein 19
3swp_B2e-411013820169NAC domain-containing protein 19
3swp_C2e-411013820169NAC domain-containing protein 19
3swp_D2e-411013820169NAC domain-containing protein 19
4dul_A2e-411013817166NAC domain-containing protein 19
4dul_B2e-411013817166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G10720.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715421e-117EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824150.11e-163protein BEARSKIN1-like
SwissprotQ9SV873e-82BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A0D9W5F80.0A0A0D9W5F8_9ORYZ; Uncharacterized protein
STRINGLPERR04G10720.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.13e-65NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]