PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G10720.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 1268aa    MW: 138451 Da    PI: 6.6344
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G10720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.96.9e-35101151129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      +ppGfrFhPtdeel+ +yLkkk+  +k+               P          ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + +
  LPERR04G10720.1  10 VPPGFRFHPTDEELLLYYLKKKIGFEKIGS------------AP----------QNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT 81 
                      69*********************9998665............23..........479************************************9 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + +++g++ktLvfy+grap+g+ktdW+mheyrle
  LPERR04G10720.1  82 -SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 115
                      .8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.8171137IPR003441NAC domain
SuperFamilySSF1019417.59E-495137IPR003441NAC domain
PfamPF023651.3E-2611114IPR003441NAC domain
PfamPF085836.8E-14374443IPR013892Cytochrome c oxidase biogenesis protein Cmc1-like
Gene3DG3DSA:3.20.20.701.4E-125498851IPR013785Aldolase-type TIM barrel
SuperFamilySSF513951.16E-108499851No hitNo description
CDDcd029332.35E-162499832No hitNo description
PfamPF007242.2E-77506828IPR001155NADH:flavin oxidoreductase/NADH oxidase, N-terminal
Gene3DG3DSA:3.20.20.701.3E-1258811247IPR013785Aldolase-type TIM barrel
CDDcd029332.91E-1488891228No hitNo description
SuperFamilySSF513954.51E-1068891247No hitNo description
PfamPF007241.5E-768901223IPR001155NADH:flavin oxidoreductase/NADH oxidase, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1268 aa     Download sequence    Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFEKIGSA PQNEWYFFSH KDRKYPTGSR  60
TNRATTAGFW KATGRDKCIR TSYRKIGMRK TLVFYRGRAP HGQKTDWIMH EYRLEDADDA  120
QGGTSEDGWV VCRVFKKKCF FKIGGGGGGG GEGSSGSQGG GGDIFGGHGH HLAVSPPLDH  180
DHHQARAAMA AASHYMHHPH QYHSSFYYSQ MQPSPPPPPP PPHSAYSHHV QVQDLLTNHR  240
PSASAADAAG GGYDFSGGLQ PVAAAGLDVG SSDGLGEGVG RDHATGGDAG GAEQQWQGMD  300
GFSNGGGGAA AVQQQLASAM SSGGQRGGEM DLWGYGSRLL RFRSLPAPSA TAKSSPPSAA  360
SSTGVVHINI SSEMHPPLTL HRHPMCAEII EAFQKCHVDH PVKKFFGECT DLKIKLDKCF  420
RQEKALKRKA NFEESKKFKE QLQAYKREMA ENDKELEWTH GLATAKLFST TGIHNQFKFY  480
KDKDKHGASE SKANMEPLPL ASSYEMGRFT LSHRIVLAPL TRSRSYGNIP QSQAILYYLQ  540
RATKGGLLIA EATGVSSDAQ GMSLIPHTPG IWTKEQVEAW KPIVDAVHAK DGIFFCQIWH  600
VGRASDLEQE PISSTNKPVE KNEDNYMDFP IPRRLAVEEI PDVINHFRMA ARYAIDAGFD  660
GVEIHGAHGF LLEQFMKDNA NDRTDEYGGS LQNRCRFALE VVDAVASEVG SDSVGIRLSP  720
YASYLSCYDS DPDALGVYMA QELDKRGILY CSAVEPEMIM VDGKMRIPHR LHDMRKAFRR  780
TFMVGGGYGR EEGNRAVADG YADMVVYGRL FLANPDLLKR FQLNAPLNKY DRSTFYTDDP  840
VVGYTDYPFL DDCEATNAMG YSYLQLLMGA SQRGEDRKGA STNNMESIPL LSPYNMGKFN  900
LSHRIVLAPL TRSRSYGNLP QPHAMEYYSQ RATKGGLLIA EATGVSSDAQ GMSVIPHTPG  960
IWTKEQVEAW KPIVDAVHAK GGIFFCQIWH VGRASDMEER PISSTDKPIQ RTEENYFLNF  1020
STPRSLTAEE IPDVINHFAL AAKNALDAGF DGVEVHAANG FLLDQFMKDG VNNTRSDDYG  1080
GSLANRCRLA LEVVDAVAAV AGAGRTGVRL SPFSRCLDCA DSDPDSLAAH MARELGARGV  1140
LYLNVVEPEM VAAAGEGDQR LVIPHRLRGV REAFAGTLMA GGGYDREEGN WAVAGGYADL  1200
VVYGRLFLAN PDLPARFRIG AALNGYDRAT FYTADPVVGY TDYPFLDGGG EEAAAAAASS  1260
SGEEEGGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vji_A1e-1564961247836912-oxophytodienoate reductase (OPR1)
2q3r_A1e-1564961247836912-oxophytodienoate reductase 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G10720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620838.10.0putative 12-oxophytodienoate reductase 12
SwissprotB9FFD20.0OPR12_ORYSJ; Putative 12-oxophytodienoate reductase 12
TrEMBLA0A0D9W5F80.0A0A0D9W5F8_9ORYZ; Uncharacterized protein
STRINGLPERR04G10720.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.13e-62NAC domain containing protein 70
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]