PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G08900.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family E2F/DP
Protein Properties Length: 505aa    MW: 55240.8 Da    PI: 4.711
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G08900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.28.9e-26110175171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++ll+++++gi++ln+++k L   dv  ++RRiYDi+NVLe+ +liekk kn+irw+g
  LPERR04G08900.1 110 RYDNSLGLLTKKFINLLKQAQDGILDLNDASKIL---DV--RKRRIYDITNVLEGTGLIEKKLKNRIRWRG 175
                      689*******************************...**..9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-26107176IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-32110175IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.79E-16110173IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.2E-22112175IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.31E-41185291No hitNo description
SuperFamilySSF1440743.92E-31186291No hitNo description
PfamPF164211.2E-28190289IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAGGGRAPAA QHIVQSVQRS VPMPPARMRF AAPGDYHRFP LPPSPATASR DGGEMEEGIV  60
IKSPTPLKRK TPCGDSEAAI SSEHTMTNPG LTEGDGSSPG NPSTPASSSR YDNSLGLLTK  120
KFINLLKQAQ DGILDLNDAS KILDVRKRRI YDITNVLEGT GLIEKKLKNR IRWRGSDDSG  180
TNFDSDVSCL QTEVENLYIQ EQALDRSISE IKEKMEELTE DESNHRWLFV TEDDIKGLPC  240
FQNEALIAIK GPRGTTLEVP DPDEAGDYVQ RRYRIVLRST MGPIDLYLVS QFKKMEELGD  300
TATPPRHASV PEPPSVETEA EQSSKQNMFL NVQQDIQKAP ELNASHAFRG MKKITPSDVD  360
ADTDYWLLTD GDISITDMWT TARAYLIDRW IDQSPPFLIF PIQFATTGVS ATVGGNLIGD  420
AALCAAYASA NVPTFPPVSP VLDVDAGADE EVAEREGDEG ERDRCGQRPN SRPYFSVISS  480
AVLASPSFVS CTAASLRHRG GGRRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-22105175273PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145167RKRRIYDITNVLEGTGLIEKKLK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G08900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0675810.0AK067581.1 Oryza sativa Japonica Group cDNA clone:J013113N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637107.10.0transcription factor E2FA isoform X2
SwissprotQ9FV717e-99E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A0D9W4S40.0A0A0D9W4S4_9ORYZ; Uncharacterized protein
STRINGLPERR04G08900.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-99E2F transcription factor 1
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Wu M,Liu L,Hijazi H,Chan C
    A multi-layer inference approach to reconstruct condition-specific genes and their regulation.
    Bioinformatics, 2013. 29(12): p. 1541-52
    [PMID:23610368]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]