PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G08410.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

S1Fa-like

Protein Properties

Length: 80aa MW: 8951.68 Da PI: 10.5244

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G08410.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	134.4	2.7e-42	11	80	2	70
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v ++e+ kGlnPG ivllv+++lll+f+vgny+ly+yaqk+lPPrkkkPvskkk+kreklkqGv++PGe LPERR04G08410.1 11 NVIIEEVnKGLNPGTIVLLVITTLLLLFFVGNYALYMYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE 80 55667778*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	4.0E-9	12	80	No hit	No description
Pfam	PF04689	3.9E-40	16	80	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MAEQFTDSAN NVIIEEVNKG LNPGTIVLLV ITTLLLLFFV GNYALYMYAQ KTLPPRKKKP 60 VSKKKMKREK LKQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G08410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK289133	5e-85	AK289133.1 Oryza sativa Japonica Group cDNA, clone: J090099A10, full insert sequence.
GenBank	BT129157	5e-85	BT129157.1 Oryza sativa clone RRlibA00156 mRNA sequence.
GenBank	BT130526	5e-85	BT130526.1 Oryza sativa clone RRlibC01181 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633609.1	5e-30	DNA-binding protein S1FA2
Swissprot	Q7XLX6	4e-31	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A0D9W4L1	3e-50	A0A0D9W4L1_9ORYZ; Uncharacterized protein
STRING	LPERR04G08410.1	5e-51	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]