PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G08400.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

S1Fa-like

Protein Properties

Length: 80aa MW: 8913.63 Da PI: 10.608

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G08400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	135.9	9.3e-43	12	80	3	70
S1FA 3 vakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 v ++e+ kGlnPG+ivll v+++ll+f+vgny+lyvyaqk+lPPrkkkPvskkk+kreklkqGv++PGe LPERR04G08400.1 12 VLIEEVnKGLNPGMIVLLAVSTFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE 80 5667878*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	2.0E-17	12	80	No hit	No description
Pfam	PF04689	6.8E-40	16	80	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MADKFADSTN NVLIEEVNKG LNPGMIVLLA VSTFLLLFFV GNYALYVYAQ KTLPPRKKKP 60 VSKKKMKREK LKQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G08400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121205	4e-76	AK121205.1 Oryza sativa Japonica Group cDNA clone:J023087P18, full insert sequence.
GenBank	BT131031	4e-76	BT131031.1 Oryza sativa clone RRlibC00345 mRNA sequence.
GenBank	CT833993	4e-76	CT833993.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z77, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633609.1	8e-32	DNA-binding protein S1FA2
Swissprot	Q7XLX6	7e-33	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A0D9W4L0	5e-50	A0A0D9W4L0_9ORYZ; Uncharacterized protein
STRING	LPERR04G08400.1	8e-51	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37120.1	2e-11	S1FA-like DNA-binding protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]