PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G07940.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 282aa    MW: 28605.9 Da    PI: 4.4871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G07940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184899156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  LPERR04G07940.1 48 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 99
                     5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.41E-2948107No hitNo description
SuperFamilySSF541714.38E-2149106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-2949106IPR001471AP2/ERF domain
PfamPF008471.0E-104998IPR001471AP2/ERF domain
SMARTSM003803.1E-3249112IPR001471AP2/ERF domain
PROSITE profilePS5103221.56249106IPR001471AP2/ERF domain
PRINTSPR003671.5E-85061IPR001471AP2/ERF domain
PRINTSPR003671.5E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MMNFSSYFYS SSSSSAAAGG GGGEKKSSSA TKTKKQSAAA EQGNTTTTRY LGVRRRPWGR  60
YAAEIRDPAT KERHWLGTFD TAEEAAVAYD RAARSLRGAR ARTNFAYPDL PPGSSVTPYL  120
SPDLSDNNSD QLLHPFYASA AAAAAQLPAP VASGGGGDYA AMYGNNFGAD ADEIDMSSLM  180
VDDIGVHDGD LSSMIGGGGG GGGGGDVSVY GGNGGNGGGG GWCDASDFAA AYGGAAASPA  240
AGHGMYFEEG YVHSPLFSPM PAVDDAGGDG FQLGGSSSSY YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1850105662ATERF1
3gcc_A5e-1850105662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G07940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551041e-79CR855104.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0113L04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635285.15e-98ethylene-responsive transcription factor LEP
TrEMBLA0A0D9W4F80.0A0A0D9W4F8_9ORYZ; Uncharacterized protein
STRINGLPERR04G07940.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-24ERF family protein