PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G07790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | Trihelix | ||||||||
Protein Properties | Length: 330aa MW: 35003.7 Da PI: 5.4071 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.3 | 6.6e-26 | 19 | 101 | 1 | 73 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 rWt+qe+l+Lie+++ +e r r ++ ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++ +s LPERR04G07790.1 19 RWTRQEILVLIEGKKVVEGRGRGRRgggggagggaAEPTKWAAVAEYCRRHGLERGPVQCRKRWSNLAGDYKKIREWERSVNS 101 8******************9995433455556666*******************************************99754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-11 | 19 | 100 | No hit | No description |
PROSITE profile | PS50090 | 6.539 | 19 | 86 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-5 | 19 | 85 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MASAGGEGGG SGRAPRLPRW TRQEILVLIE GKKVVEGRGR GRRGGGGGAG GGAAEPTKWA 60 AVAEYCRRHG LERGPVQCRK RWSNLAGDYK KIREWERSVN SPAAAGGGKE VSFWAMRNDA 120 RRERRLPGFF DREVYDILEG RAGNAAAAAA GKEEEEKVFD SSRRAGGGAG DGDDGLFSSE 180 EEDDEDEEAT PPAAAAPSVT TAAVAAVAPP PAPAAVAVPT SEKKTDPPRQ EASEQAGTSR 240 AKQPEQIVED SPAQGAHKRQ RSDDASGEAP DLQGQLIEIL DRSSRLVAAQ LEAQNINCQL 300 DREQRKDQVS SLLGVLGKVA DALYRIADKM |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G07790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 1e-117 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826048.1 | 1e-132 | trihelix transcription factor ASR3-like isoform X1 | ||||
TrEMBL | A0A0D9W4E1 | 0.0 | A0A0D9W4E1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G07790.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3915 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-46 | Trihelix family protein |