PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G06900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 183aa MW: 19655.6 Da PI: 6.5137 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.3 | 1e-11 | 72 | 160 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 +s+v + ++v+p++ a + + tl +grsW +++ ++++ l++GW++F+ +n+L+ gD ++F+l+ g ++ e++v+v+r LPERR04G06900.1 72 KSHVQQPFQVVVPRSLAPFLPAT-TAPATLW---WRGRSWGMRF--TGGRMIQRLEAGWRGFAVDNDLRLGDGCLFELVdGGgERVEFRVQVLR 159 55666666666666666333222.2232222...479*******..9999999************************88566788888999888 PP S CS B3 99 k 99 + LPERR04G06900.1 160 A 160 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.24E-14 | 63 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-14 | 63 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.33E-13 | 64 | 159 | No hit | No description |
PROSITE profile | PS50863 | 11.744 | 66 | 161 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-9 | 69 | 160 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MATDPTATAP PQPPRFSSPE PAAAVHAAEK SISGDIAAVP EEEDPVSPAE KIPRPVVLPL 60 LGKPYFSCIM CKSHVQQPFQ VVVPRSLAPF LPATTAPATL WWRGRSWGMR FTGGRMIQRL 120 EAGWRGFAVD NDLRLGDGCL FELVDGGGER VEFRVQVLRA EIPAGIRGRA GGCTSATPIV 180 IDD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G06900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119999 | 1e-118 | AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635251.1 | 4e-75 | B3 domain-containing protein Os04g0386900 | ||||
Swissprot | Q7XLP4 | 3e-76 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A0D9W436 | 1e-129 | A0A0D9W436_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G06900.1 | 1e-129 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Publications ? help Back to Top | |||
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