PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G04720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26548 Da PI: 7.9246 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.8 | 2.1e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n +nrqvtfskRr g++KKA EL vLCda+v +i+fs tg+ly+++s LPERR04G04720.1 9 KRIDNATNRQVTFSKRRGGLMKKARELAVLCDADVGLIVFSCTGRLYDFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 77.5 | 3.5e-26 | 90 | 176 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++a+ +q+e++ L+++++nL +++R+llGe+L++ ++++Lq L++q+e sl++iR+kK++ll e+i el +k ++q en +Lrkk+ LPERR04G04720.1 90 SEAKFWQREVTTLRQQVQNLHHNNRQLLGEELSNFTVRDLQLLQNQVEMSLTSIRNKKDQLLAEEILELNQKGSAVQTENIELRKKF 176 6789*********************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.385 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.05E-41 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-30 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.9E-25 | 90 | 176 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.239 | 92 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGRGKIAIKR IDNATNRQVT FSKRRGGLMK KARELAVLCD ADVGLIVFSC TGRLYDFASS 60 SIVPFVSMKS IIERYQEAGE EQCRLLNPVS EAKFWQREVT TLRQQVQNLH HNNRQLLGEE 120 LSNFTVRDLQ LLQNQVEMSL TSIRNKKDQL LAEEILELNQ KGSAVQTENI ELRKKFNIAH 180 QRNIELHKRL NSGESTSGEQ ATRTCKDPGE SSTHRDSCVH IDLELSHKGD EDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-19 | 1 | 80 | 1 | 74 | MEF2C |
5f28_B | 7e-19 | 1 | 80 | 1 | 74 | MEF2C |
5f28_C | 7e-19 | 1 | 80 | 1 | 74 | MEF2C |
5f28_D | 7e-19 | 1 | 80 | 1 | 74 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G04720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102927 | 0.0 | AK102927.1 Oryza sativa Japonica Group cDNA clone:J033114E21, full insert sequence. | |||
GenBank | AY177695 | 0.0 | AY177695.2 Oryza sativa (japonica cultivar-group) transcription factor MADS25 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635120.1 | 1e-143 | MADS-box transcription factor 25 | ||||
Swissprot | Q84NC5 | 1e-144 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A0D9W3C8 | 1e-171 | A0A0D9W3C8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G04720.1 | 1e-172 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-77 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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