PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G04510.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 267aa    MW: 29092.2 Da    PI: 5.2026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G04510.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1293138555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +  +Er+RR+r+N+++ eLr ++P+      +K++Ka+i++ A+ +I +Lq
  LPERR04G04510.2  93 NIVMERNRRKRLNKKLYELRAVVPNI-----TKMDKASIVRDAIAHIEKLQ 138
                      5679*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.74588137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-1191136No hitNo description
SuperFamilySSF474591.31E-1691155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-1093138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1494153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-1594143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
METASDMGFL LDLYWHTPHF LNTFDLAAVA ADSLMDNFGM YVPSPEKDGS LSDLFAYSSH  60
YDDESSPEVA NSCSTVAAAA AAAAAATAAS SKNIVMERNR RKRLNKKLYE LRAVVPNITK  120
MDKASIVRDA IAHIEKLQEE ERQLLEEISA LQPAVVPTAG AAVKEDDGVA LPRLKRMRCT  180
PRVDDSPPLQ ILQLEVSKVG ESTIAVSIRC AKTRDAMAKL CRAMELLRLK VVSANAAAVD  240
GTIVHTMFVE DISTTMVSED RTNGWCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G04510.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633867.15e-95transcription factor bHLH35
TrEMBLA0A0D9W3A50.0A0A0D9W3A5_9ORYZ; Uncharacterized protein
STRINGLPERR04G04510.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-24bHLH family protein