PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G35710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 20826.1 Da PI: 7.1646 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 41 | 90 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+++AeIrd + ng r++lg+f+taeeAa a+++a+ +++g LPERR03G35710.1 41 FRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEEAAMAYDQAAFAMRG 90 79******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.3E-38 | 40 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-31 | 40 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.919 | 40 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 41 | 52 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-23 | 41 | 99 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.9E-14 | 41 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.21E-28 | 41 | 100 | No hit | No description |
PRINTS | PR00367 | 5.2E-11 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSAQQDTPSE QRLITAGLIS FLESRRATAG ASRHPQQQQA FRGVRKRPWG KYAAEIRDST 60 RNGVRVWLGT FDTAEEAAMA YDQAAFAMRG SAAVLNFPID QVQRSMEKDG LNDMLLHGHG 120 DGGPVIALKR RHSCSGRRRN KQPPAEAGGQ QQQVMELEDL GADYLEELLA ASQSQEDSSS 180 SFSASSHHSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-29 | 41 | 98 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G35710.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629379.1 | 1e-60 | ethylene-responsive transcription factor 15 | ||||
Swissprot | A0A3Q7I5Y9 | 5e-51 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A0D9W1N5 | 1e-137 | A0A0D9W1N5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G35710.1 | 1e-138 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-33 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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