PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G35460.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 87aa    MW: 9232.97 Da    PI: 6.0729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G35460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-09349347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +W++ E  ++ +a + +  +   +W+++a+ +g g+t+ +++ ++ k+
  LPERR03G35460.1  3 SWSASENARFENALATYDIDtprRWELVAAAVG-GKTADDVRRHYDKL 49
                     6*****************99*************.***********775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.862154IPR017884SANT domain
SMARTSM007172.4E-4152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-5347IPR009057Homeodomain-like
PfamPF002498.1E-7348IPR001005SANT/Myb domain
CDDcd001677.98E-8349No hitNo description
SuperFamilySSF466895.85E-11351IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MASWSASENA RFENALATYD IDTPRRWELV AAAVGGKTAD DVRRHYDKLY VDVAHIEADG  60
NHAAGHPNGA AANNVNGAAN NLTGRGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-154581165RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G35460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879511.13e-24protein RADIALIS-like 3
SwissprotF4JVB86e-17RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0D9W1K63e-55A0A0D9W1K6_9ORYZ; Uncharacterized protein
STRINGLPERR03G35460.15e-56(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-19RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]