PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G35200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NF-YC | ||||||||
Protein Properties | Length: 255aa MW: 27967.1 Da PI: 11.1442 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 37.4 | 5.7e-12 | 153 | 237 | 15 | 99 |
NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 d ++P+ar+++i++a++ + s ea l+ ka e+f+ ++ ++ +a + +++++ ++++av + + ++fl d vp++ LPERR03G35200.1 153 DHGACSFPMARVRQIMRAEDATIRPSNEAVFLVNKATEIFLRRFADDAYQNALKDRKKSIVYDNLSTAVCNQKRYKFLSDFVPQK 237 555679****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.23E-19 | 140 | 238 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.2E-13 | 158 | 221 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.1E-20 | 159 | 236 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAGKKKQTAL PSPSPNRPPA AKDRSTPKPR KSPNPAAATT KKQKPAAQSG SKRKVKDDAS 60 AAKSGTPAKK ANRQQKNQPE VPKPRKHKGA NSTPTPTKKM KMKDKEPTPS KKQPTPTPTK 120 RKLGDVDPQQ ERSQTPTPTK KRKDKAAAAA DADHGACSFP MARVRQIMRA EDATIRPSNE 180 AVFLVNKATE IFLRRFADDA YQNALKDRKK SIVYDNLSTA VCNQKRYKFL SDFVPQKVAA 240 EDALKAPVIS QVNQP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G35200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103607 | 1e-151 | AK103607.1 Oryza sativa Japonica Group cDNA clone:J033133H15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650910.1 | 5e-93 | PREDICTED: serine/arginine repetitive matrix protein 1 isoform X1 | ||||
TrEMBL | A0A0D9W1H8 | 1e-180 | A0A0D9W1H8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G35200.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12826 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-27 | nuclear factor Y, subunit C10 |