PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G35200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YC
Protein Properties Length: 255aa    MW: 27967.1 Da    PI: 11.1442
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G35200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC37.45.7e-121532371599
            NF-YC  15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      d    ++P+ar+++i++a++   + s ea  l+ ka e+f+  ++  ++ +a + +++++   ++++av + + ++fl d vp++
  LPERR03G35200.1 153 DHGACSFPMARVRQIMRAEDATIRPSNEAVFLVNKATEIFLRRFADDAYQNALKDRKKSIVYDNLSTAVCNQKRYKFLSDFVPQK 237
                      555679****************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.23E-19140238IPR009072Histone-fold
PfamPF008086.2E-13158221IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-20159236IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAGKKKQTAL PSPSPNRPPA AKDRSTPKPR KSPNPAAATT KKQKPAAQSG SKRKVKDDAS  60
AAKSGTPAKK ANRQQKNQPE VPKPRKHKGA NSTPTPTKKM KMKDKEPTPS KKQPTPTPTK  120
RKLGDVDPQQ ERSQTPTPTK KRKDKAAAAA DADHGACSFP MARVRQIMRA EDATIRPSNE  180
AVFLVNKATE IFLRRFADDA YQNALKDRKK SIVYDNLSTA VCNQKRYKFL SDFVPQKVAA  240
EDALKAPVIS QVNQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G35200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036071e-151AK103607.1 Oryza sativa Japonica Group cDNA clone:J033133H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650910.15e-93PREDICTED: serine/arginine repetitive matrix protein 1 isoform X1
TrEMBLA0A0D9W1H81e-180A0A0D9W1H8_9ORYZ; Uncharacterized protein
STRINGLPERR03G35200.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-27nuclear factor Y, subunit C10