PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G34130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 354aa    MW: 38085.1 Da    PI: 4.2657
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G34130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM682.6e-21121523128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk...sgyWka 85 
                      pG+ F+P+d+ l++ yL++k+++++++  + i+++d+y+++P dL +       ++ +++ w+fF++ + +++  ++ r++ra+    +++Wk+
  LPERR03G34130.1  12 PGLVFRPSDDKLITLYLRPKITNTPFKN-NLINNADVYSSDPADLVAnhnpapGTQDSSSVWFFFCSPRYTSKrvSSGRRQRAIGagaESTWKS 104
                      8************************999.89**************74356666555566799****9877666234557777665333667*** PP

              NAM  86 tgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                       g +k+v  ++g+ vg  + + +      + +++  ++  W+m ey+l
  LPERR03G34130.1 105 EGGKKAVNGADGRPVGYLQKFSYGvydssTSSKRAFTRLGWCMTEYSL 152
                      *****************99999965565445566667999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.69710176IPR003441NAC domain
SuperFamilySSF1019413.79E-3012176IPR003441NAC domain
PfamPF023651.3E-1312152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGADDETAPD RPGLVFRPSD DKLITLYLRP KITNTPFKNN LINNADVYSS DPADLVANHN  60
PAPGTQDSSS VWFFFCSPRY TSKRVSSGRR QRAIGAGAES TWKSEGGKKA VNGADGRPVG  120
YLQKFSYGVY DSSTSSKRAF TRLGWCMTEY SLDDDDDVTT NNGSTEKLVL CKVYRSPRAA  180
TTKRKADEAG VDDHTEDAPP SVRPRQEAAA GSEQDKQSSC LLPPGFDLDA FLESLWMDHN  240
MGNNNVFSNA TVEQLPCAPA MDLVGGDGDF FQTASGPCMD AEVMERLAAG ETVDDILGMS  300
PLIAGNGDGG GDFFQTASGP CMDTEVMERL AAGETVDDIL GMSSLIGQQE VLCF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G34130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.11e-107NAC transcription factor NAM-2
TrEMBLA0A0D9W1280.0A0A0D9W128_9ORYZ; Uncharacterized protein
STRINGLPERR03G34130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-15NAC domain containing protein 35