PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G33950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 24487.4 Da PI: 8.1852 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 42 | 2.8e-13 | 6 | 149 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyat..gkrknratk... 79 +G+ F+Ptd++l + yL++ + + + +++++ +d+y++ P +L + +++++ wy ++ + + +rk r++ LPERR03G33950.1 6 KGLVFSPTDNQLTDVYLRRYLLRLDDLPSSCFHVADVYSASPDRLLAnlapapgtgngdDGDGDDRVWYVPTPVRLLGGKiaRRRKDRTVVgdg 99 7999****************9998844447899************7446787876655433335567776666655444311446666432455 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 g W+a g ++v ++ g + L +y++ + g k +W+m ey+l LPERR03G33950.1 100 gGGCWRAEGWAEDVRG--SAGGGRMQKLSYYRAeySGGGGIKREWIMVEYSL 149 5899**********88..566799999****7622556678*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.684 | 4 | 164 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-20 | 5 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-10 | 7 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAGTIKGLVF SPTDNQLTDV YLRRYLLRLD DLPSSCFHVA DVYSASPDRL LANLAPAPGT 60 GNGDDGDGDD RVWYVPTPVR LLGGKIARRR KDRTVVGDGG GGCWRAEGWA EDVRGSAGGG 120 RMQKLSYYRA EYSGGGGIKR EWIMVEYSLP GSEHLVALCK LYRSPRYSRY ITPPSMTSSP 180 STSVASGSKR KADQEEADHR DAPACSVRRQ NPPPDAGQET AEPFC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G33950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690139.1 | 1e-38 | PREDICTED: uncharacterized protein LOC107303819 | ||||
TrEMBL | A0A0D9W107 | 1e-163 | A0A0D9W107_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G33950.1 | 1e-164 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6280 | 15 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55210.1 | 3e-07 | NAC domain containing protein 63 |