PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G33790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 34115.7 Da PI: 4.4742 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.4 | 2.4e-22 | 12 | 152 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk...sgyWka 85 pG+ FhP+d+ l++ yL++k++++++e + i+++d+y+++P +L + ++ +++ wyfF++ + +++ ++ r++ra+ +++Wk+ LPERR03G33790.1 12 PGLAFHPSDDKLITLYLRPKITNTPFEH-RLINNADVYSSDPAELVAnhtpapGTQDSSSVWYFFCSPRYTSKrvSSGRRQRAIGagaESTWKS 104 8************************999.89**************7435666544556679*****9877666234557777665333667*** PP NAM 86 tgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 g +k+v ++g+ vg + + + + +++ ++ W+m ey+l LPERR03G33790.1 105 EGGKKAVNGADGRPVGYLQKFSYGvydssTSSKRAFTRLGWCMTEYSL 152 *****************99999965565445566667999******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.381 | 10 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-14 | 12 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-31 | 12 | 176 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGADGEIAPD RPGLAFHPSD DKLITLYLRP KITNTPFEHR LINNADVYSS DPAELVANHT 60 PAPGTQDSSS VWYFFCSPRY TSKRVSSGRR QRAIGAGAES TWKSEGGKKA VNGADGRPVG 120 YLQKFSYGVY DSSTSSKRAF TRLGWCMTEY SLDDDDDVTT NNGSTEKLVL CKVYRSPRAA 180 TTKRKADEAN VDDQAPPCAR ARQEVTGSEQ HEQSGLLPEF DLTTLLLAPI DDEVERQFSR 240 ATTEECWRYA FGDDPMPTME IAGNGDGGGD FFQTASGPCM DAEVMERLAA GETVDDILGM 300 SSLIGQQEVL CF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G33790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629669.1 | 1e-117 | NAC domain-containing protein 71-like | ||||
Refseq | XP_015629670.1 | 1e-117 | NAC domain-containing protein 71-like | ||||
TrEMBL | A0A0D9W0Y9 | 0.0 | A0A0D9W0Y9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G33790.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 3e-16 | NAC domain containing protein 35 |