PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G33770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25290.9 Da PI: 9.8382 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.8 | 3.4e-13 | 12 | 104 | 3 | 91 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pG+ F+P+d+ l++ yL +k+++++++ + i+++d+y ++P dL + ++ +++ wy F++ + ++++ + +r ++ W t + + LPERR03G33770.1 12 PGLVFRPSDDKLITLYLPPKITNTPFKN-NLISNADVYCSDPADLVAnhnpapGTQDSSSVWYLFCSPRYTSKRVSSGRR-QRHPAWMITRRMR 103 8************************999.89**************7435666655556679*****99887776555555.4668898887766 PP NAM 91 e 91 + LPERR03G33770.1 104 H 104 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.781 | 10 | 174 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-14 | 11 | 103 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-6 | 12 | 103 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGADGEMSPD RPGLVFRPSD DKLITLYLPP KITNTPFKNN LISNADVYCS DPADLVANHN 60 PAPGTQDSSS VWYLFCSPRY TSKRVSSGRR QRHPAWMITR RMRHPACGRG KRPPPAASKI 120 SSRRVCYRRG LTWMLFWSRF GWTTTWETTT CSAMPRWNSV RGIFFTTSCL VLRRWSSSVV 180 AGTFFQTATG PCIDAEVMER LAAGETVDEI LGTTPLIGQQ EVQCF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G33770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9W0Y7 | 1e-166 | A0A0D9W0Y7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G33770.1 | 1e-167 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 9e-08 | NAC domain containing protein 53 |