PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G33280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 388aa    MW: 39000.2 Da    PI: 9.4627
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G33280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.9e-3997157262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      +e  lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  LPERR03G33280.1  97 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 157
                      56789*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-3981155IPR003851Zinc finger, Dof-type
PfamPF027012.1E-32101155IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.609101155IPR003851Zinc finger, Dof-type
PROSITE patternPS013610103139IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVFSSVPAVY LDPPNWNQQQ QLPTAGNAGA GATAAAAGGG GVDEQSQHHH HHHQLPPMPP  60
PHHAAGAFMM PAASGGGAAV RPGSMTERAR MAKIPQPEPG LKCPRCESTN TKFCYFNNYS  120
LSQPRHFCKT CRRYWTRGGA LRNVPVGGGC RRNKRSKSSK SSSSTSAATA GGGGATSSST  180
SSTATGGSAA AMMPPPQQLQ TTHLPFLASL GGGDHYGAGA SRLGFAGLSS LDPIDYQLGG  240
GGGAAAAAIG MEQWRLPPQI QQFPFMSRTD AGMPQISGGG IYPFDAEATA AGFAGQFLAG  300
GGNKVAGSSG LITQLASVKM EDSNNGNSSA AMNSSPREFL GLPGNLQFWG GGGGGGGNGN  360
GSGGNGGNGG GGWADLSGFN SSSSGNMI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G33280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685421e-73AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence.
GenBankAP0043031e-73AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12.
GenBankAP0149631e-73AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792577.11e-125dof zinc finger protein DOF2.4-like
TrEMBLA0A0D9W0T00.0A0A0D9W0T0_9ORYZ; Uncharacterized protein
STRINGLPERR03G33280.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.13e-43Dof family protein