PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G33280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | Dof | ||||||||
Protein Properties | Length: 388aa MW: 39000.2 Da PI: 9.4627 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.2 | 8.9e-39 | 97 | 157 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ LPERR03G33280.1 97 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 157 56789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-39 | 81 | 155 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-32 | 101 | 155 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 101 | 155 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 103 | 139 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MVFSSVPAVY LDPPNWNQQQ QLPTAGNAGA GATAAAAGGG GVDEQSQHHH HHHQLPPMPP 60 PHHAAGAFMM PAASGGGAAV RPGSMTERAR MAKIPQPEPG LKCPRCESTN TKFCYFNNYS 120 LSQPRHFCKT CRRYWTRGGA LRNVPVGGGC RRNKRSKSSK SSSSTSAATA GGGGATSSST 180 SSTATGGSAA AMMPPPQQLQ TTHLPFLASL GGGDHYGAGA SRLGFAGLSS LDPIDYQLGG 240 GGGAAAAAIG MEQWRLPPQI QQFPFMSRTD AGMPQISGGG IYPFDAEATA AGFAGQFLAG 300 GGNKVAGSSG LITQLASVKM EDSNNGNSSA AMNSSPREFL GLPGNLQFWG GGGGGGGNGN 360 GSGGNGGNGG GGWADLSGFN SSSSGNMI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00295 | DAP | Transfer from AT2G37590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G33280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068542 | 1e-73 | AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence. | |||
GenBank | AP004303 | 1e-73 | AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12. | |||
GenBank | AP014963 | 1e-73 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792577.1 | 1e-125 | dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A0D9W0T0 | 0.0 | A0A0D9W0T0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G33280.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4893 | 29 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 3e-43 | Dof family protein |