PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G31620.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 419aa MW: 43672.2 Da PI: 5.054

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G31620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.9	4.4e-13	229	280	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + +rrkq+NRe+ArrsR RK a + eLe v +L eN++L +l +++ LPERR03G31620.1 229 RLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKF 280 689**************************************98887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-17	225	289	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.438	227	282	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-10	227	281	No hit	No description
SuperFamily	SSF57959	1.69E-9	229	278	No hit	No description
Pfam	PF00170	5.1E-10	229	278	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	8.6E-51	296	412	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MDRVFSVEEI SDPFWSAPAP AHQQDGGGGG GAGAGGGRAG GGGGGGGANA MNRCPSEWYF 60 QKFLEEAVLD SPVPNPSPRG EAGGTMRGAG GVVPVDVKQP QLSAAAGTSA VVDPVEYNAM 120 LKQKLEKDLA AVAMWRASGT MPPERSAAGS SLLNSDVSHI GTSNSIAGNA TPVQNKLIAT 180 SGGLGSQLVQ NIDVLVKQPT SSSSREQSDD DDMEGEAETA GSGKPTDQRL QRRKQSNRES 240 ARRSRSRKAA HLNELEAQVS QLRVENSSLL RRLADVNQKF NEAAVDNRVL KADVETLRAK 300 VKMAEDSVKR VTGMNALFPA ASDMSSLSMP FNGSPSEATS DAAVPIQDDP NNYFATNNDV 360 GGNTYMPDIP SSAQEDEDFV NGALAAGKIG RTASLQRVAS LEHLQKRMCG GPASSGSTS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MDRVFSVEEI SDPFWSAPAP AHQQDGGGGG GAGAGGGRAG GGGGGGGANA MNRCPSEWYF  60
QKFLEEAVLD SPVPNPSPRG EAGGTMRGAG GVVPVDVKQP QLSAAAGTSA VVDPVEYNAM  120
LKQKLEKDLA AVAMWRASGT MPPERSAAGS SLLNSDVSHI GTSNSIAGNA TPVQNKLIAT  180
SGGLGSQLVQ NIDVLVKQPT SSSSREQSDD DDMEGEAETA GSGKPTDQRL QRRKQSNRES  240
ARRSRSRKAA HLNELEAQVS QLRVENSSLL RRLADVNQKF NEAAVDNRVL KADVETLRAK  300
VKMAEDSVKR VTGMNALFPA ASDMSSLSMP FNGSPSEATS DAAVPIQDDP NNYFATNNDV  360
GGNTYMPDIP SSAQEDEDFV NGALAAGKIG RTASLQRVAS LEHLQKRMCG GPASSGSTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	43	GGRAGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G31620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT829375	0.0	CT829375.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631619.1	0.0	bZIP transcription factor RISBZ2-like
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A0D9W052	0.0	A0A0D9W052_9ORYZ; Uncharacterized protein
STRING	LPERR03G31620.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	2e-41	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]