PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G31200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19479.8 Da PI: 7.3933 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.4 | 4.2e-37 | 22 | 122 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C++dCvlap+fpa++p+++a+v+++FGa n+ ++l++lp +er +a++s++ eA r++dPvyG++gvi++lq +++ ++ el LPERR03G31200.2 22 RCAACKFLRRQCSRDCVLAPHFPASDPHRYACVQRVFGAGNIARMLQHLPVQERGRAADSMAAEAYRRVQDPVYGCAGVINRLQDDIRAAQCEL 115 6********************************************************************************************* PP DUF260 95 allkeel 101 a +++++ LPERR03G31200.2 116 AWTRAQI 122 *999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.121 | 21 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-35 | 22 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010081 | Biological Process | regulation of inflorescence meristem growth | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0004181 | Molecular Function | metallocarboxypeptidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MSPGEEMEEL AHGSSSGGVS RRCAACKFLR RQCSRDCVLA PHFPASDPHR YACVQRVFGA 60 GNIARMLQHL PVQERGRAAD SMAAEAYRRV QDPVYGCAGV INRLQDDIRA AQCELAWTRA 120 QIAMQGAAAA HAREATTAQR QRDGGGVAAG APTPPPQQQQ ATASDAAWQL DEYLDSGFPF 180 P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-29 | 15 | 115 | 4 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-29 | 15 | 115 | 4 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G31200.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC087096 | 1e-65 | AC087096.11 Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-65 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-65 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690105.1 | 3e-67 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 2e-39 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A0D9W001 | 1e-128 | A0A0D9W001_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G36620.1 | 1e-75 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-38 | LOB domain-containing protein 24 |