PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G30870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TCP | ||||||||
Protein Properties | Length: 338aa MW: 33579.9 Da PI: 8.6847 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.1 | 7.9e-35 | 44 | 142 | 1 | 83 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec..e 74 a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++ + s c + LPERR03G30870.1 44 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDSLPSLdpaafasipgaggaaaagK----SGCscT 133 5899*************************************************************7776666665554422220....333211 PP TCP 75 aesssssas 83 +e+ s++s LPERR03G30870.1 134 SETTTSKGS 142 111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.5E-34 | 46 | 150 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.336 | 47 | 105 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEAAGAGDGG GSGRSTSSKR GRGAEMVAAK AGTTTASRIY RVRATGGKDR HSKVYTAKGI 60 RDRRVRLSVA TAIQFYDLQD RLGFDQPSKA IEWLINAASP AIDSLPSLDP AAFASIPGAG 120 GAAAAGKSGC SCTSETTTSK GSELSLSRDK EVTVASAPAT ATAAAASFTE LLIAGGGGAA 180 IGNGGEQRQQ SWQQPEAAGG GGKGGGGGEG VAAYGGFSAG SSFGNAPPIG MVPAQPFNFS 240 GDISHYDHLA APAAPAAAGD YNLNFSMSSG FLGANRGTLQ SNSPSSFSGH HHQQQHLQRL 300 DGSTISFLLG HAAAAGGGGV HPAASEGQLT SSSALQLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-26 | 52 | 106 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-26 | 52 | 106 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 207 | GGKGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G30870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133340 | 2e-75 | AC133340.4 Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence. | |||
GenBank | AK242788 | 2e-75 | AK242788.1 Oryza sativa Japonica Group cDNA, clone: J090057A17, full insert sequence. | |||
GenBank | AP014959 | 2e-75 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629084.1 | 1e-112 | transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 1e-113 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | A0A0D9VZV6 | 0.0 | A0A0D9VZV6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G30870.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 3e-34 | TCP family protein |