PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G30390.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 354aa    MW: 39723.7 Da    PI: 8.1061
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G30390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51341622128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s
  LPERR03G30390.1  34 LPGFRFHPTDEELVTFYLRRKVAKKSLSI-EIIKEMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYS 126
                      69***************************.89***************445556889*************************************9 PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  LPERR03G30390.1 127 AanSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 162
                      9888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-5633189IPR003441NAC domain
PROSITE profilePS5100555.64233189IPR003441NAC domain
PfamPF023654.6E-2535162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVTSKEFAKE TMDKIKTDGE VLLAGDEEEG ELVLPGFRFH PTDEELVTFY LRRKVAKKSL  60
SIEIIKEMDI YKHDPWDLPK ASTVGGEKEW YFFCLRGRKY RNSIRPNRVT GSGFWKATGI  120
DRPIYSAANS GESIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPAAAAAN ASPSMQEAEV  180
WTICRIFKRS VTYRKQQPQQ VWRPPAPATV TIKAPPPGDS SSNTGSFESD GGDEYMNSGQ  240
LAPAITQQQN HGRQMINTMN NGSYFFNDSL HHGHHKLHHQ GQRGSLQLAP AMEQKPLMNT  300
SSAMTVSFHQ NNDHGFTATA TAADFYKDGY LEEIARMMEV ADPSPTGFYD CRYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-503519519171NO APICAL MERISTEM PROTEIN
1ut4_B7e-503519519171NO APICAL MERISTEM PROTEIN
1ut7_A7e-503519519171NO APICAL MERISTEM PROTEIN
1ut7_B7e-503519519171NO APICAL MERISTEM PROTEIN
3swm_A8e-503519522174NAC domain-containing protein 19
3swm_B8e-503519522174NAC domain-containing protein 19
3swm_C8e-503519522174NAC domain-containing protein 19
3swm_D8e-503519522174NAC domain-containing protein 19
3swp_A8e-503519522174NAC domain-containing protein 19
3swp_B8e-503519522174NAC domain-containing protein 19
3swp_C8e-503519522174NAC domain-containing protein 19
3swp_D8e-503519522174NAC domain-containing protein 19
4dul_A7e-503519519171NAC domain-containing protein 19
4dul_B7e-503519519171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G30390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735390.0AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628846.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK557e-86NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0D9VZP20.0A0A0D9VZP2_9ORYZ; Uncharacterized protein
STRINGLPERR03G30390.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-86NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]