PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G30050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 760aa    MW: 83812 Da    PI: 7.1328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G30050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-0772114347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E++ + +a +q G++ +++I  +++  +   q++++++ +
  LPERR03G30050.1  72 AWTRQEEQSFFNALRQEGKN-FEKITLRVQ-SKNKDQVRHYYYRL 114
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.11E-962118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-466117IPR009057Homeodomain-like
PROSITE profilePS5129311.45968119IPR017884SANT domain
SMARTSM007175.4E-569117IPR001005SANT/Myb domain
CDDcd001674.77E-572115No hitNo description
PfamPF002491.6E-572114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MGRRDALSKV ESRNPTLSWL GLKLMQIGSL LLGSFTAFAI LSSAHRYSSP SPTSGGGTRS  60
ASAEKPTRRW AAWTRQEEQS FFNALRQEGK NFEKITLRVQ SKNKDQVRHY YYRLVRRMKK  120
LLGPEFSLDA KNPKDTIAAM LRWWSLLEKF SCSASKLHLK PRRFKTFVEA FGNQLLKDRK  180
KTRKKCAQGD MCLSSPSSIL NRAPGNESLS VKLLSVDVSN GSKVSKGAFF KRVAEPNSND  240
KSDSTKGDVS ATDTVKRKRK AGGVVASAAY RKWERAAMAG VSLVADAAEE LERNIVNADS  300
RPTSPSLRNV CNVDGLGTDH IKEADQQAPA KLKLQLFPIN EATRKALEKD EHNPHLELTL  360
SSKKKISSVL EHLNRKWGNS NIASGELFLF PYCAHQEDLA TYQRWTIRDT VAVADVFLSV  420
NSPSVFRLRY GWFSLAELRG VAEISVTRFE ICMIPEDIHA HSPSEACVEK DGTLLSSRDP  480
EQHLCNSKDR SASSTCNRAE VPEQCIDVPT SQVGRQKQEQ VKAYNANLGM DCATISLGAW  540
ADSLTDISVG YLLTEASKDT NTDCPETSIA KTALLLENAC SYDSFDAAVA LHASRYKAAE  600
QPALASHSTI WGGEETCDEF SFKLAASRKQ EGSITSTSSS PDSDGDVHPS NSEGFQGFLQ  660
DLAGAEIADN PCSDDATDTD IDSLCAKSPP RSDNDSELKD QSLFDLYWAD SLGPLDLEIP  720
TLRYQAGDLL LGDSQNSWNR IMANSLDAFR NLSFFTADKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G30050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649712.10.0PREDICTED: TSL-kinase interacting protein 1
RefseqXP_015690960.10.0PREDICTED: TSL-kinase interacting protein 1
TrEMBLA0A0D9VZJ40.0A0A0D9VZJ4_9ORYZ; Uncharacterized protein
STRINGLPERR03G30050.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-161TSL-kinase interacting protein 1