PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G29730.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 375aa    MW: 38755.7 Da    PI: 6.9531
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G29730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.5e-32104157255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  LPERR03G29730.1 104 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 157
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.99E-16101158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28102158IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23104157IPR006447Myb domain, plants
PfamPF002495.8E-8105156IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MLQRNLPNLS LRISPPAISA AAAASSEEPT PAATGSVITT DAEGRGEVAS FFGNPSSGTA  60
DPPGLSLGLG TPAQEDAAGA GRHLQPQGCA FKRAAGSKRS VRAPRMRWTT ALHARFVHAV  120
ELLGGHERAT PKSVLELMNV KDLTLAHVKS HLQMYRTVKS TDRSPHIAAG EAQLQQQAGM  180
EMVAMEAAAA GGGGGGGGRV VLPIMPACED MVGICGSSAA ATSSAAAAAA AYFLCATTSS  240
TATAPLAVVP SPPRPTIPPR KTDHTPVLEK GVAIVDSLHR CQKHNYTPVL QDAPQAADSD  300
HLTGNNLPMG ASAQASIEAM TFTNSSSPTS SSSPSLASLE QLLPEDSFAP NLEISLGRQD  360
WNIKNHPEEL SVKYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16105159357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16105159357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16105159357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16105159357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16105159458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G29730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084080.0AK108408.1 Oryza sativa Japonica Group cDNA clone:002-142-G11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629095.11e-172transcription factor LUX
TrEMBLA0A0D9VZF60.0A0A0D9VZF6_9ORYZ; Uncharacterized protein
STRINGLPERR03G29730.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-39G2-like family protein