PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G29630.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 371aa MW: 37752.6 Da PI: 9.803

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G29630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.7	1.1e-37	67	122	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + LPERR03G29630.1 67 PLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 122 679**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	68	117	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	68	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDHQLKGAGA LPMMLQPIVS NPSPTSSSST TSSRSASAPH TQQQRSSSAT SSPQGVATAD 60 QQATAPPLRC PRCNSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKP 120 RPMPAPVAKP PPLSCKGAAP PLGLGVGVGG AQFPWAAPGQ QQQAAATAHL MALLNSARGM 180 QSHGGGGGNV HRLLGLDTMG HLQILPGGPN GAGAGATASL WPQSAARPIT PPPTHMDSQL 240 MGHHDVLSSL GLKLPTSAST SPSPVASYYS DQLHAVVSNA GGGGGGRSQA AAPYVDVSSA 300 ASLPCTTAVT SSLSSAMSSV TAAPQTMISN TVGMDMPAVS SLGAPEMQYW NGPAAMSVAW 360 PDLPTSNGAF P

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDHQLKGAGA LPMMLQPIVS NPSPTSSSST TSSRSASAPH TQQQRSSSAT SSPQGVATAD  60
QQATAPPLRC PRCNSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKP  120
RPMPAPVAKP PPLSCKGAAP PLGLGVGVGG AQFPWAAPGQ QQQAAATAHL MALLNSARGM  180
QSHGGGGGNV HRLLGLDTMG HLQILPGGPN GAGAGATASL WPQSAARPIT PPPTHMDSQL  240
MGHHDVLSSL GLKLPTSAST SPSPVASYYS DQLHAVVSNA GGGGGGRSQA AAPYVDVSSA  300
ASLPCTTAVT SSLSSAMSSV TAAPQTMISN TVGMDMPAVS SLGAPEMQYW NGPAAMSVAW  360
PDLPTSNGAF P

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G29630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629418.1	1e-140	dof zinc finger protein 4-like
TrEMBL	A0A0D9VZE0	0.0	A0A0D9VZE0_9ORYZ; Uncharacterized protein
STRING	LPERR03G29630.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	4e-31	Dof family protein