PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G28970.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28321.4 Da PI: 9.3035 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.1 | 6.6e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye+++ LPERR03G28970.3 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSTKGKLYEFAT 59 9***********************************************86 PP | |||||||
2 | K-box | 107.9 | 1.2e-35 | 78 | 173 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + s+e++++ ++++e++kLk+++e++q+ q+hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elq+kek+lqeenk L+k+ LPERR03G28970.3 78 KVLISAESETQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKE 171 555667888999********************************************************************************99 PP K-box 98 le 99 l LPERR03G28970.3 172 LV 173 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.903 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-33 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.14E-41 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-30 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.855 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALIIFST KGKLYEFATD 60 SCMDKILERY ERYSYAEKVL ISAESETQGN WCHEYRKLKA KVETIQKCQK HLMGEDLESL 120 NLKELQQLEQ QLENSLKHIR SRKSQLMLES INELQRKEKS LQEENKVLQK ELVEKQKVQK 180 QQVQWDQTQP QTSSSSSSFM MREALPTTNI SNYTAAAGER AEDVAGQAQQ VRIGLPPWML 240 NHING |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G28970.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY332478 | 0.0 | AY332478.1 Oryza sativa (japonica cultivar-group) MADS box protein (AGL10) mRNA, complete cds. | |||
GenBank | FJ750935 | 0.0 | FJ750935.1 Oryza sativa clone KCS096F11 MADS-box transcription factor 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631034.1 | 1e-145 | MADS-box transcription factor 14 isoform X2 | ||||
Swissprot | Q10CQ1 | 1e-146 | MAD14_ORYSJ; MADS-box transcription factor 14 | ||||
TrEMBL | A0A0D9VZ44 | 1e-180 | A0A0D9VZ44_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA03G0314900.1 | 1e-142 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 7e-70 | MIKC_MADS family protein |