PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G28970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 574aa MW: 64914 Da PI: 9.8907 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.9 | 2.4e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss LPERR03G28970.1 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVAIVLFSHAGRLYQFSS 59 9***********************************************96 PP | |||||||
2 | SRF-TF | 95.2 | 2.9e-30 | 331 | 381 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs++gklye+++ LPERR03G28970.1 331 KRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIIFSTKGKLYEFAT 381 79***********************************************86 PP | |||||||
3 | K-box | 87.7 | 2.2e-29 | 77 | 174 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 +++ ++ ++ ++++ +qe+ +Lk+++e Lq++qR+llGedL +L +eL qLe q+ + lk+iR +K+++ll+++ +l++ke++lq++n+ L++ LPERR03G28970.1 77 SQDATAPTSDDMQNNYQEYVNLKAQVEVLQHSQRNLLGEDLAPLGTNELDQLEGQVVRTLKQIRLRKTKVLLDELCDLKRKEQMLQDANRVLKR 170 455566788899********************************************************************************** PP K-box 97 klee 100 kl+e LPERR03G28970.1 171 KLDE 174 *986 PP | |||||||
4 | K-box | 103.8 | 2.1e-34 | 400 | 493 | 4 | 97 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + s+e++++ ++++e++kLk+++e++q+ q+hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elq+kek+lqeenk L+k+ LPERR03G28970.1 400 KVLISAESETQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKE 493 555667888999******************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.866 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.1E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.91E-38 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-30 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-25 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.333 | 88 | 178 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS50066 | 32.927 | 323 | 383 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-40 | 323 | 382 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-33 | 324 | 411 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 325 | 379 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-30 | 325 | 345 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.99E-38 | 327 | 398 | No hit | No description |
Pfam | PF00319 | 3.9E-25 | 332 | 379 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-30 | 345 | 360 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-30 | 360 | 381 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.4E-29 | 406 | 493 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.556 | 410 | 507 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVAIVLFSH AGRLYQFSSS 60 SNMLKTLERY QRYIYASQDA TAPTSDDMQN NYQEYVNLKA QVEVLQHSQR NLLGEDLAPL 120 GTNELDQLEG QVVRTLKQIR LRKTKVLLDE LCDLKRKEQM LQDANRVLKR KLDEIGVEAA 180 PTQPMWNGNC SNGDGGGRGG GVFSSEPPQP EHFFQGLGFH AVDVNQPPAP PPGACLYELF 240 VSNVTSKYKN RRRSTSPPPS LAGVLRQAAA VASVIVSRRC HHRWVRKTEE NAVPPSVFVA 300 DRRNSVDLAR SRGRGEGGGG RSMGRGKVQL KRIENKINRQ VTFSKRRAGL LKKANEISVL 360 CDAEVALIIF STKGKLYEFA TDSCMDKILE RYERYSYAEK VLISAESETQ GNWCHEYRKL 420 KAKVETIQKC QKHLMGEDLE SLNLKELQQL EQQLENSLKH IRSRKSQLML ESINELQRKE 480 KSLQEENKVL QKENPCSFLQ LVEKQKVQKQ QVQWDQTQPQ TSSSSSSFMM REALPTTNIS 540 NYTAAAGERA EDVAGQAQQV RIGLPPWMLN HING |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-19 | 1 | 396 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 4e-19 | 1 | 396 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 4e-19 | 1 | 396 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 4e-19 | 1 | 396 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 4e-19 | 1 | 396 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 4e-19 | 1 | 396 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 4e-19 | 1 | 396 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 4e-19 | 1 | 396 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G28970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY551916 | 0.0 | AY551916.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS211 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631033.1 | 1e-150 | MADS-box transcription factor 14 isoform X1 | ||||
Swissprot | Q10CQ1 | 1e-142 | MAD14_ORYSJ; MADS-box transcription factor 14 | ||||
TrEMBL | A0A0D9VZ42 | 0.0 | A0A0D9VZ42_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G28970.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13618 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 3e-68 | MIKC_MADS family protein |