PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G27630.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TALE | ||||||||
Protein Properties | Length: 232aa MW: 26172.4 Da PI: 7.4331 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.8 | 4.9e-10 | 128 | 165 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + LPERR03G27630.2 128 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 165 665559******************************98 PP | |||||||
2 | BELL | 93.8 | 1.6e-30 | 5 | 59 | 18 | 72 |
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+ LPERR03G27630.2 5 QVDRRYNHYCDQMQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 59 7***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.0E-5 | 1 | 57 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-27 | 3 | 56 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.6 | 106 | 169 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-9 | 109 | 173 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.46E-13 | 109 | 170 | No hit | No description |
SuperFamily | SSF46689 | 4.19E-18 | 110 | 176 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 112 | 175 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.7E-19 | 126 | 165 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSMMQVDRRY NHYCDQMQMV VNFFDSVMGF GAATPYTALA QKAMSRHFRC LKDAIAAQLR 60 HTCELLGEKD AGTSSGLTKG ETPRLRAIDQ SLRQQRAFHH MGIMEQEAWR PQRGLPERSV 120 NILRSWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM IEEMYQQECK 180 EFDGSSSAAA AAGDDPSGAG DDTHSPTTTG AAQHHQHRLE HGGASHGFSC DL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 1e-17 | 115 | 173 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-17 | 115 | 173 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G27630.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287476 | 0.0 | AK287476.1 Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981881.1 | 1e-142 | BEL1-like homeodomain protein 4 | ||||
Refseq | XP_015690056.1 | 1e-142 | PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 1e-109 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
Swissprot | Q9SW80 | 1e-109 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A0D9VYM2 | 1e-175 | A0A0D9VYM2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G27630.1 | 1e-166 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 1e-111 | BEL1-like homeodomain 4 |
Publications ? help Back to Top | |||
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