PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G27480.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GRF

Protein Properties

Length: 592aa MW: 61930.8 Da PI: 7.4822

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G27480.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	211	255	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e LPERR03G27480.1 211 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 255 79****************************************986 PP
2	QLQ	57.4	4.4e-20	145	181	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++ LPERR03G27480.1 145 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 181 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.2E-11	145	181	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-14	146	180	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.087	146	181	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	211	255	IPR014977	WRC domain
Pfam	PF08879	2.1E-20	212	254	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MELGGGVVMA AVDGGGGGGG ELPGSRLLKH GRGNAGDQEH GWRPPPAKQA RSSGGDAAAA 60 AVSEAVKVAA PFLLGASCSP GHGGEQMLSF SSSAASACAS GGGGGGAAAA GGAMPLYYGT 120 PASCSGLSSV SLSSSMQGAM ARVRGPFTPS QWIELEHQAL IYKYLAANSP VPHSLLIPIR 180 RSLTSPYSPV YFGSSTLGWG SFQLGYSGNT DPEPGRCRRT DGKKWRCSRD AVADQKYCER 240 HMNRGRHRSR KHVEGQPGHA AKAMPAAVAA AAASATQPSA PAAHGGGAAA GLAVNHQQQQ 300 MKNYAVNTAN PCSLQYSREL VNKHNENEQV QDSGSLSMLT SMNTRNTGSL FPFSKQQHNP 360 FEVSNSRSDF GLVSPDSLMS SPHSSLENVN MLTSQSLNEH QSSVSLQHFV DWPRTPAQGA 420 LAWPDAEDMQ AQRSQLSISA PMASSDLSSA STSPIHEKLM LSPLKLSREY SPIGLGAIAN 480 RDEVNQGEAN WMPMFRDSLM GGPLGEVLNK NNNMEASNCL SASLNLLNDG WDSSSGFDSS 540 PVGVLQKTTF GSVSSSTGSS PRLENHSVYD GISNLRDDLG SIVVNHPSIR LV

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MELGGGVVMA AVDGGGGGGG ELPGSRLLKH GRGNAGDQEH GWRPPPAKQA RSSGGDAAAA  60
AVSEAVKVAA PFLLGASCSP GHGGEQMLSF SSSAASACAS GGGGGGAAAA GGAMPLYYGT  120
PASCSGLSSV SLSSSMQGAM ARVRGPFTPS QWIELEHQAL IYKYLAANSP VPHSLLIPIR  180
RSLTSPYSPV YFGSSTLGWG SFQLGYSGNT DPEPGRCRRT DGKKWRCSRD AVADQKYCER  240
HMNRGRHRSR KHVEGQPGHA AKAMPAAVAA AAASATQPSA PAAHGGGAAA GLAVNHQQQQ  300
MKNYAVNTAN PCSLQYSREL VNKHNENEQV QDSGSLSMLT SMNTRNTGSL FPFSKQQHNP  360
FEVSNSRSDF GLVSPDSLMS SPHSSLENVN MLTSQSLNEH QSSVSLQHFV DWPRTPAQGA  420
LAWPDAEDMQ AQRSQLSISA PMASSDLSSA STSPIHEKLM LSPLKLSREY SPIGLGAIAN  480
RDEVNQGEAN WMPMFRDSLM GGPLGEVLNK NNNMEASNCL SASLNLLNDG WDSSSGFDSS  540
PVGVLQKTTF GSVSSSTGSS PRLENHSVYD GISNLRDDLG SIVVNHPSIR LV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G27480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073578	0.0	AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628630.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A0D9VYJ8	0.0	A0A0D9VYJ8_9ORYZ; Uncharacterized protein
STRING	LPERR03G27480.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	6e-55	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]