PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G26230.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CO-like
Protein Properties Length: 417aa    MW: 45487.2 Da    PI: 6.7556
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G26230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.2e-071356339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                     +r C+ + + +++++C  ++ +lC+ C  + H+        H+v
  LPERR03G26230.1 13 ARACDGCMRRRARWHCPADDAFLCQACDASVHSAnplarrhHRV 56
                     578*****************************668888886655 PP
2CCT67.92.7e-23336379144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  LPERR03G26230.1 336 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 379
                      9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7981158IPR000315B-box-type zinc finger
SMARTSM003361.4E-71158IPR000315B-box-type zinc finger
PfamPF006432.7E-51355IPR000315B-box-type zinc finger
CDDcd000212.70E-111458No hitNo description
PfamPF062034.7E-18336378IPR010402CCT domain
PROSITE profilePS5101715.993336378IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAATGAALGA RTARACDGCM RRRARWHCPA DDAFLCQACD ASVHSANPLA RRHHRVRLPS  60
ASSASSPGSS PRSASAAAAA LEDPDAPAWL HGLKRRPRTP RPSKPGGGGG KHDATSAATM  120
NAASAVPDVE AAEDSGIVGE IDHEDVVEEE DDEDLLYRVP VFDPMLAELY NPTMADDSHI  180
ETVEHKPASR FAVLPFSNPS PADADGLSGF DVPDMELASF AADMESLLMG VDDGFDDLGF  240
LDEEKPQVKF DLDMDFGSIS PPAPAPERED RKRKRPEMIL KLDYEGVIDS WLRDGASPWF  300
HGDRPHVDPG ESWPDFSAGG RGGLGMGVTA VTGGEREARV SRYREKRRTR LFAKKIRYEV  360
RKLNAEKRPR MKGRFVKRPS LPPLPLPLPR QHPHPPPRAL PPMMLAPRGG AHGRFRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298LKRRPRT
2346362RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G26230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205630.0AK120563.1 Oryza sativa Japonica Group cDNA clone:J013132M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628112.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0D9VY320.0A0A0D9VY32_9ORYZ; Uncharacterized protein
STRINGLPERR03G26230.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-47B-box type zinc finger protein with CCT domain