PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G25340.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YA
Protein Properties Length: 262aa    MW: 28647 Da    PI: 9.587
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G25340.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1056.3e-33166222158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+  ksrkpylheSRh+hA+rR+Rg+gGrF
  LPERR03G25340.2 166 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-LKSRKPYLHESRHQHAMRRARGTGGRF 222
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.9E-37164225IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.017165225IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.3E-29167222IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.7E-25168190IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860170190IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.7E-25199222IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVVRMESRPG GTNLVEQRGH GALPSGIPIQ QPWWTTSAGI GAVSPAVVAP GSGGGATKVA  60
QGRDGDDATG ESSEDSRRSG EPKDGSTGQE KHHATSQMTA LASDYLTPFS QLELNQPIAS  120
AAYQYPDSYY MSLVGPYGPQ AMSAQTHMQL PGLTHSRMPL PLEISEEPVY VNAKQYHGIL  180
RRRQSRAKAE LEKKVLKSRK PYLHESRHQH AMRRARGTGG RFLNTKKNET GAPNEKGEPN  240
KEEQYCGHHR VPSDLQLLQK ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21166230266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G25340.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698540.0AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence.
GenBankEU8470120.0EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650437.21e-165PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBLA0A0D9VXS90.0A0A0D9VXS9_9ORYZ; Uncharacterized protein
STRINGLPERR03G25340.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-40nuclear factor Y, subunit A7