PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G24620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GATA | ||||||||
Protein Properties | Length: 181aa MW: 19964.7 Da PI: 10.3361 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 43.7 | 3.9e-14 | 104 | 140 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tL naCGl+++ kg+ LPERR03G24620.1 104 CQNCGTSEkmTPAMRRGPAGPRTLYNACGLMWANKGT 140 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 3.0E-12 | 32 | 72 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 11.876 | 32 | 74 | IPR010402 | CCT domain |
SMART | SM00401 | 1.6E-6 | 98 | 151 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.8E-8 | 101 | 148 | No hit | No description |
CDD | cd00202 | 3.04E-13 | 103 | 158 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.8E-13 | 103 | 142 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 8.2E-12 | 104 | 140 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MPPGLANLVS PNQLENRGYD DLLQRTDIPA KRVASLIRFR EKRKERNFDK KIRHAVRKEV 60 ALRMQRRKCQ FAGTANMEGE SLSPGCDPAS RGSGQDFPSR DSECQNCGTS EKMTPAMRRG 120 PAGPRTLYNA CGLMWANKGT LRSYPKAKVE SSVGATEQSI IDNKVLVVPN TGNITANNVE 180 A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G24620.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105025 | 1e-174 | AK105025.2 Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628049.1 | 1e-104 | GATA transcription factor 18 | ||||
Swissprot | A2XKR7 | 1e-105 | GAT18_ORYSI; GATA transcription factor 18 | ||||
Swissprot | Q10F25 | 1e-105 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | A0A0D9VXI7 | 1e-132 | A0A0D9VXI7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G24620.1 | 1e-133 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-45 | ZIM-like 1 |
Publications ? help Back to Top | |||
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