PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G24200.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRF
Protein Properties Length: 493aa    MW: 55037.8 Da    PI: 9.8823
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G24200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC758.1e-24221265145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+
  LPERR03G24200.1 221 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVEN 265
                      79****************************************997 PP
2QLQ576e-20162197237
              QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll  i+k
  LPERR03G24200.1 162 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 197
                      9******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.6E-11161197IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.762162197IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-14162195IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.803221265IPR014977WRC domain
PfamPF088794.5E-20222264IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MKGLLLFKGH PPSLSLVSQR ATIHISPHFL PPRKHTTTHH SLSPLKAEAV KPQCPQQCSP  60
PPPVLLPSCP PKMFADFSAA MELGEVLGLH GLTVPSTKES DLSIIKRATS FTQAAAAASY  120
PSPFLDEQKM LRFAKAAHTL PSGLDFGREN EQRFLLSRTK RPFTPSQWME LEHQALIYKY  180
LNAKAPIPSS LLISISKSFK SSVNRMSWRP LYQGFPNADS DPEPGRCRRT DGKKWRCSKE  240
AMADHKYCER HINRNRHRSR KPVENQSRKT VKETPCAGSL TSPVVQGSFK KAKVNEMKPG  300
SVSCWTDSLN RTMASKEKGN KAAEENNAPL MNLTNQQPTL SLLSQLKQQN KAEKFLDSEP  360
ISSNTMLKPW ESSNQQSNKN IPFTKVHDRG CLQSVLQNFS PPKDEKMGYQ KTKDSNAIPV  420
PSNFYSTPEG PCVSCHTSNM VQMQEDSISS SWEMPQGGPL GEILTNSKNT DDSTMKPEAR  480
PYGWLLNLED HAM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G24200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0586590.0AK058659.1 Oryza sativa Japonica Group cDNA clone:001-018-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650403.10.0PREDICTED: growth-regulating factor 9
SwissprotQ9FRG80.0GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLA0A0D9VXB90.0A0A0D9VXB9_9ORYZ; Uncharacterized protein
STRINGLPERR03G24200.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131242529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.15e-37growth-regulating factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]