PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G24140.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 301aa    MW: 33729.9 Da    PI: 5.8258
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G24140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-092302622254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +yps+ e++ LA+++gL+++q+++WF N+R +
  LPERR03G24140.1 230 WPYPSEVEKAALAESTGLDKKQITNWFINQRKR 262
                      58*****************************88 PP
2ELK25.23.7e-09183202322
              ELK   3 KhqLlrKYsgyLgsLkqEFs 22 
                      K +Ll+KYsgyL+sL  E+s
  LPERR03G24140.1 183 KSHLLNKYSGYLSSLLREIS 202
                      9**************88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.0E-195094IPR005540KNOX1
PfamPF037905.2E-205292IPR005540KNOX1
SMARTSM012565.4E-23101152IPR005541KNOX2
PfamPF037914.9E-20105150IPR005541KNOX2
SMARTSM011880.0015181202IPR005539ELK domain
PfamPF037898.5E-6183202IPR005539ELK domain
PROSITE profilePS5007112.098203266IPR001356Homeobox domain
SuperFamilySSF466897.27E-18204277IPR009057Homeodomain-like
SMARTSM003892.2E-11205270IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-24209267IPR009057Homeodomain-like
CDDcd000865.99E-12212266No hitNo description
PfamPF059201.5E-16223262IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEQLHPLVSG SNPNSAIPFS QPRDCTFSSP PLSESRPSMP APPASDQSET IIKAKIMSHP  60
LYPSLLRAFV DCRKVGAPVD VVGRLSSLTN ELESFSGDWH PAEQPIADPE LDQFMETYCY  120
MLTRYGQELA SPIQEAEEFF RGMEAQIASL VIDDGVSCEG VDYAPSEDDE NAGDAFGNDK  180
PTKSHLLNKY SGYLSSLLRE ISKKKKNNKG HLPRDARQKL LQWWHLHYRW PYPSEVEKAA  240
LAESTGLDKK QITNWFINQR KRHWNPVSPM APAAMDDLSF LHPQLYCANS SNSSAAALQY  300
K
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G24140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288862e-69AB028886.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH10, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651679.11e-124PREDICTED: putative homeobox protein knotted-1-like 5
SwissprotQ75LX91e-113KNOS5_ORYSJ; Putative homeobox protein knotted-1-like 5
TrEMBLA0A0D9VXB00.0A0A0D9VXB0_9ORYZ; Uncharacterized protein
STRINGLPERR03G24140.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.16e-71KNOTTED-like from Arabidopsis thaliana