PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G23450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 21500.5 Da PI: 9.1135 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.4 | 1.2e-43 | 37 | 136 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++Cv+apyfp +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdP+yG+vg i++lq+q+e+l+++l LPERR03G23450.1 37 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQHQVENLQTQL 130 7********************************************************************************************* PP DUF260 95 allkee 100 al+++e LPERR03G23450.1 131 ALAQAE 136 **9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.737 | 36 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-43 | 37 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MRDVMVAVSG GGKAASCRQA QGGGGGGGGA TASATAPCAA CKLLRRRCAA GCVFAPYFPP 60 GEPHKFANVH KVFGASNVSK LLQEIPVQHR GDAVSSLVYE ANARVRDPIY GCVGAISSLQ 120 HQVENLQTQL ALAQAEMVRL RMSNDYITRR LRVRRGGGGG GGSTTTGSPS SMTSPAKTAE 180 PEMLCKPNPE LDMVVDQPDF GFWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-51 | 31 | 139 | 5 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-51 | 31 | 139 | 5 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G23450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069911 | 1e-115 | BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds. | |||
GenBank | KJ727650 | 1e-115 | KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629600.1 | 2e-97 | LOB domain-containing protein 4 | ||||
Swissprot | Q8LBW3 | 4e-57 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0D9VX38 | 1e-149 | A0A0D9VX38_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G23450.1 | 1e-150 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-47 | LBD family protein |
Publications ? help Back to Top | |||
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