PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G23220.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 592aa    MW: 64775.4 Da    PI: 8.6971
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G23220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like444.8e-14373420451
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      lrW+ +LH+ Fveav+  G ++ +  k+ +e+m+v gL  +++kSHLQ
  LPERR03G23220.1 373 LRWSDDLHKIFVEAVAYQGEAKPTAVKETMEAMGVTGLKTQNIKSHLQ 420
                      89****************98888889*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517358.84E-4775292IPR016040NAD(P)-binding domain
PRINTSPR000812.4E-177592IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7202.0E-5076279IPR016040NAD(P)-binding domain
CDDcd052331.40E-4876282No hitNo description
PfamPF001062.4E-4276271IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.4E-17151162IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000801.1E-5151162IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000801.1E-5207215IPR002347Short-chain dehydrogenase/reductase SDR
PROSITE patternPS000610215243IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000812.4E-17228247IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000801.1E-5228247IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.4E-17252269IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF466891.36E-6367423IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-13369420IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-10373423IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015996Biological Processchlorophyll catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0034256Molecular Functionchlorophyll(ide) b reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAATAAHLPL RAPAQAGLAP LRPSSCSAAR ARFSLRPAVR RIAARGGRKL VGIRAEALPG  60
GGWVARREPM VPPYNVLITG STKGIGYALA KEFLKAGDNV IICSRSAERV ESAVNDLKME  120
FGEQHVWGIV CDVREGKDVK ALVDFARDKM KYIDIWINNA GSNAYSYKPL VETSDEALME  180
VITTNTLGLM ICCREAINMM RNQPRGGHVF NIDGAGSDGR PTPRFAAYGA TKRSVVHLTK  240
SLQAELQMNE VNNVMVHNLS PGMVTTDLLM SGATTKQAKF FINILAEPPN VVADYLVPNI  300
RAIPANQSMK PTYIRFLTGL KAYSRIFSRI AFGARRNKIM SNSKSAQDND ASYMSSILAS  360
RIIWAMQPTR SYLRWSDDLH KIFVEAVAYQ GEAKPTAVKE TMEAMGVTGL KTQNIKSHLQ  420
IPFEARRNPC RRRLAAAHVA SSSQPTSPAR RRWQISATSG CLCTTSGCLC LCYSSLVGPK  480
IQLGLAVATT ATLAAGDAVA PPGHWSRTSE MVRDNDAVMA EMEMVNNLLM DDDIEMVETN  540
FSVDDVQTME KELMNELKAM EHNSEISDSA LDEYMDNLAN YAFDLTMTSS AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ojg_A2e-177726814198Dehydrogenase/reductase SDR family member 4
5ojg_B2e-177726814198Dehydrogenase/reductase SDR family member 4
5oji_A2e-177726814198Dehydrogenase/reductase SDR family member 4
5oji_B2e-177726814198Dehydrogenase/reductase SDR family member 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for chlorophyll b degradation.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G23220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by dark treatment. {ECO:0000269|PubMed:18778405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2550260.0AB255026.1 Oryza sativa Japonica Group NOL1 mRNA for short-chain dehydrogenase/reductase NOL1, complete cds.
GenBankAK2878690.0AK287869.1 Oryza sativa Japonica Group cDNA, clone: J065203M24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628274.10.0chlorophyll(ide) b reductase NOL, chloroplastic isoform X2
SwissprotQ84ST40.0NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic
TrEMBLA0A0D9VX110.0A0A0D9VX11_9ORYZ; Uncharacterized protein
STRINGLPERR03G23220.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109381212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-07G2-like family protein
Publications ? help Back to Top
  1. Kusaba M, et al.
    Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence.
    Plant Cell, 2007. 19(4): p. 1362-75
    [PMID:17416733]
  2. Sato Y, et al.
    Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice.
    Plant J., 2009. 57(1): p. 120-31
    [PMID:18778405]