PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G22840.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YA
Protein Properties Length: 336aa    MW: 35995.4 Da    PI: 8.5794
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G22840.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.19.2e-31173229158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d+p+YVNaKQy++Il+RR +Rak+++e++l  k+rkpylheSRh+hA+rR+RgsgGrF
  LPERR03G22840.4 173 DAPIYVNAKQYEGILRRRRARAKAQSENRL-VKGRKPYLHESRHRHAMRRARGSGGRF 229
                      68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.8E-34171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.026172232IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.4E-28175229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-23175197IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-23206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006364Biological ProcessrRNA processing
GO:0048825Biological Processcotyledon development
GO:0090070Biological Processpositive regulation of ribosome biogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005525Molecular FunctionGTP binding
GO:0043022Molecular Functionribosome binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTTTTAMLSF KQSHERFGHG GAGHQQQHQP WWAGSQLLYG EAPPEEALRG DGGQFQVVPG  60
GRAALDPAAA PPPEPEKTAV PAMPKRGEVL KFSVFSGNLE PGDTGEKNRE HSATIAMQSP  120
LPEYNGRFEL GLGQSMVSPN YPCIDQCYGL VTTYAMKSMS GGRMLLPVNA AADAPIYVNA  180
KQYEGILRRR RARAKAQSEN RLVKGRKPYL HESRHRHAMR RARGSGGRFL NTKKEEGNKP  240
APATAARCGS LSGSDVSSPG AIYDHNAAAD AVDDAADHYS SCIDHHLRTP FFTPLPIIMD  300
GGGGDHHASH AHAAAAAAHF RWATAAGDGC CELLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-18173236265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213222RHRHAMRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G22840.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063980.0AK106398.1 Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628114.11e-148nuclear transcription factor Y subunit A-10 isoform X2
TrEMBLA0A0D9VWW70.0A0A0D9VWW7_9ORYZ; Uncharacterized protein
STRINGOS03T0647600-011e-147(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.36e-32nuclear factor Y, subunit A10