PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G22460.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LSD | ||||||||
Protein Properties | Length: 182aa MW: 19375.5 Da PI: 8.5441 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.4 | 1.1e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L+YP GApsV+CalC+++ LPERR03G22460.3 7 CHGCRSVLRYPSGAPSVCCALCQAI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 39.7 | 8.1e-13 | 48 | 72 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV LPERR03G22460.3 48 CGGCRTLLMYTRNADTVRCSCCSTV 72 ***********************99 PP | |||||||
3 | zf-LSD1 | 48.9 | 1e-15 | 86 | 109 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ LPERR03G22460.3 86 CGQCRTTLMYPYGAPSVKCAICHY 109 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.2E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.8E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.5E-14 | 45 | 75 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-10 | 48 | 72 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.1E-12 | 83 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-14 | 86 | 110 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MQSQIVCHGC RSVLRYPSGA PSVCCALCQA ITTVPPPAPV LEMAHLICGG CRTLLMYTRN 60 ADTVRCSCCS TVNLVRPVNN IAHVSCGQCR TTLMYPYGAP SVKCAICHYI TNTGMNTMAP 120 TPSPMPTSSG SSYNAPSTSV PTSRSQNVTV VVENPMTVDE KGKLVSPPKT RLYTTNISSL 180 LN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G22460.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111569 | 0.0 | AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence. | |||
GenBank | CT830679 | 0.0 | CT830679.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116O15, full insert sequence. | |||
GenBank | KP940472 | 0.0 | KP940472.1 Oryza sativa cultivar Zixuan1 C2C2-zinc finger LSD1-like transcription factor (LSD3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650331.1 | 1e-112 | PREDICTED: protein LOL3 | ||||
Refseq | XP_015690721.1 | 1e-112 | PREDICTED: protein LOL3 | ||||
Swissprot | Q6ASS2 | 1e-110 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A0D9VWQ1 | 1e-127 | A0A0D9VWQ1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G22460.1 | 1e-128 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-50 | LSD family protein |
Publications ? help Back to Top | |||
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